CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79780	Canola	cytosol	86.68	79.43
CDX95589	Canola	cytosol	64.23	63.08
CDX83439	Canola	cytosol	63.71	62.56
AT2G44130.1	Thale cress	cytosol	63.97	59.9
CDX71859	Canola	cytosol	61.1	58.21
CDY41196	Canola	nucleus	59.79	57.25
VIT_05s0094g01590.t01	Wine grape	cytosol	33.68	35.34
Zm00001d049016_P001	Maize	cytosol	31.85	32.8
TraesCS4A01G228600.1	Wheat	cytosol	31.33	32.61
Zm00001d007274_P001	Maize	cytosol	31.59	32.44
TraesCS4B01G087600.1	Wheat	cytosol	31.07	32.34
Solyc10g080610.1.1	Tomato	cytosol	28.46	31.69
HORVU4Hr1G014970.1	Barley	cytosol	30.29	31.44
TraesCS4B01G087800.1	Wheat	cytosol	30.29	31.35
TraesCS4A01G228800.1	Wheat	cytosol	30.29	31.35
PGSC0003DMT400060940	Potato	cytosol	27.94	31.2
TraesCS4D01G084900.1	Wheat	cytosol	30.03	31.08
EES09544	Sorghum	cytosol	31.07	31.07
EES08254	Sorghum	cytosol	30.29	30.37
KRH58914	Soybean	extracellular, plasma membrane	30.29	30.13
GSMUA_Achr6P06940_001	Banana	cytosol	28.98	30.0
Os11t0246200-00	Rice	cytosol	29.77	29.77
TraesCS4D01G085000.1	Wheat	plastid	31.33	29.48
Zm00001d050815_P001	Maize	nucleus	28.46	29.22
OQU85159	Sorghum	cytosol	28.46	28.39
Os02t0563000-00	Rice	cytosol	26.89	26.34
CDY58028	Canola	cytosol	24.54	26.26
CDY36579	Canola	cytosol	24.28	25.98
CDY39979	Canola	cytosol	24.28	25.91
CDX87309	Canola	cytosol	24.28	25.91
CDY69686	Canola	cytosol	24.02	25.77
CDY53309	Canola	cytosol	23.5	25.14
GSMUA_Achr6P28790_001	Banana	cytosol	10.71	24.85

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.2	UniProt:A0A078FYJ0	EnsemblPlants:CDY17882	ProteinID:CDY17882	ProteinID:CDY17882.1
InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00002222001	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF34	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EE2371	SEG:seg	:	:

Description

BnaC04g03370DBnaC04g03370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYJ0]

Coordinates

chrLK032079:-:281224..282504

Molecular Weight (calculated)

42395.3 Da

IEP (calculated)

7.939

GRAVY (calculated)

-0.399

Length

383 amino acids

Sequence
(BLAST)

001: MSKKRAGDVS KGIHKSHGLI PGLPSELAIE CLVRVPHRFQ YDMKSVSRSW RSLLSDSSLT KERQRCGKAE LLLCLVQPLT PPNPASKASP RVSGTPRFGL
101: SVYNATMSTW NRVAFPDQQI PLFCECVAVQ AAGKILLIGG WDLETLQPVK DVYVIELAGE GSGRRWRKGA SMNEARSFFA CATVGSTKVY VAGGHDDQKN
201: ALRSAEVYDV EKDEWLMLTP MTEGRDDYTV GMELGFCVLS GYGTESQGRF RSDGEVYDPV TDSWSRIENV WPFPDTCRRG RVAGEIRGSS SKLWCFTDSK
301: RRWETEDESG KWRLDLESMQ LPVTGSSVYG GSLGGEAVVM IGGGSESEGR GTMMRKTSEK WSRVHEIPFG FSTQPFSHAS IYV

Best Arabidopsis Sequence Match ( AT2G44130.1 )
(BLAST)

001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV

Arabidopsis Description

F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.