Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85159 | Sorghum | cytosol | 81.77 | 79.43 |
| Os02t0563000-00 | Rice | cytosol | 63.81 | 60.87 |
| Zm00001d049016_P001 | Maize | cytosol | 43.43 | 43.55 |
| Zm00001d007274_P001 | Maize | cytosol | 43.43 | 43.43 |
| GSMUA_Achr6P28790_001 | Banana | cytosol | 16.89 | 38.18 |
| GSMUA_Achr6P06940_001 | Banana | cytosol | 37.53 | 37.84 |
| Zm00001d036925_P001 | Maize | cytosol | 37.0 | 36.03 |
| PGSC0003DMT400060940 | Potato | cytosol | 30.29 | 32.94 |
| Solyc10g080610.1.1 | Tomato | cytosol | 30.03 | 32.56 |
| CDX83439 | Canola | cytosol | 33.24 | 31.79 |
| Bra000342.1-P | Field mustard | cytosol | 32.71 | 30.42 |
| CDX95589 | Canola | cytosol | 30.56 | 29.23 |
| KRH58914 | Soybean | extracellular, plasma membrane | 29.76 | 28.83 |
| CDY41196 | Canola | nucleus | 30.56 | 28.5 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 29.22 | 28.46 |
| AT2G44130.1 | Thale cress | cytosol | 31.1 | 28.36 |
| CDX71859 | Canola | cytosol | 30.56 | 28.36 |
| AT3G59940.1 | Thale cress | cytosol | 31.64 | 28.23 |
| Bra007494.1-P | Field mustard | nucleus | 31.37 | 27.86 |
| CDX79780 | Canola | cytosol | 30.56 | 27.27 |
| Bra004807.1-P | Field mustard | cytosol | 30.83 | 26.81 |
| VIT_05s0094g01590.t01 | Wine grape | cytosol | 25.2 | 25.75 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:2.120.10.80 | MapMan:9.2.1.1.2 | UniProt:A0A1D6Q3E6 | ProteinID:AQK53087.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF153 |
| SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI00084577BB | EnsemblPlantsGene:Zm00001d050815 |
| EnsemblPlants:Zm00001d050815_P001 | EnsemblPlants:Zm00001d050815_T001 | SEG:seg | : | : | : |
Description
F-box/kelch-repeat protein SKIP20
Coordinates
chr4:+:124389946..124391067
Molecular Weight (calculated)
38937.8 Da
IEP (calculated)
5.138
GRAVY (calculated)
-0.171
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMEAEEDGG GIEGELIPGL PDDVAMECLA RVPSRSHRRM RRVCRRWRGT VGSAEFRRRR MAAGASEDMV FLVQTAPARG DGKGSTSECA LVAANLTTGE
101: WRRVEGPAET WRPVPLFAQC AAAGDGRHVA VVGGWDPDTL RPTSDVRLLD VPAGTWRRGP KMPDSRSFFG CAGGGGNVYV AGGHDECKNA LRSAFAYSVA
201: ADAWRALPDM LEERDEPQLV VATPGRVLAA SGYPTEAQGA FKDTAEWYNA GGGAWTSECD VVPDGDTAGT CLASVRGTVW AVGAGNGGVR EWDGAARAWK
301: DVADGPPGMK ACLKAVGVGN GGAVLVFGTV ADAAAEGVNY SAWVMEASSG AWKRVPVPSG FGGFVYSAAA VPV
101: WRRVEGPAET WRPVPLFAQC AAAGDGRHVA VVGGWDPDTL RPTSDVRLLD VPAGTWRRGP KMPDSRSFFG CAGGGGNVYV AGGHDECKNA LRSAFAYSVA
201: ADAWRALPDM LEERDEPQLV VATPGRVLAA SGYPTEAQGA FKDTAEWYNA GGGAWTSECD VVPDGDTAGT CLASVRGTVW AVGAGNGGVR EWDGAARAWK
301: DVADGPPGMK ACLKAVGVGN GGAVLVFGTV ADAAAEGVNY SAWVMEASSG AWKRVPVPSG FGGFVYSAAA VPV
001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
Arabidopsis Description
F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.