Factsheet for Zm00001d017275_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

peroxisome 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003015_P001
Zm00001d003016_P001
Zm00001d017274_P001
Zm00001d017275_P001
Zm00001d017276_P001
Zm00001d017279_P001
Zm00001d020933_P001
Zm00001d027249_P001
Zm00001d029015_P001
Zm00001d033286_P001
Zm00001d036925_P001
Zm00001d051161_P003
Zm00001d051163_P002
Zm00001d051164_P001
Zm00001d051166_P001
Zm00001d053619_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	Zm00001d003015_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d003016_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d017274_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d017275_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d017276_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d017279_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d020933_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d027249_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d029015_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d033286_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d051161_P003	AT2G37040.1	21798944
AT2G37040.1	Zm00001d051163_P002	AT2G37040.1	21798944
AT2G37040.1	Zm00001d051164_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d051166_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d053619_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d003015_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d003016_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d017274_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d017275_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d017276_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d017279_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d020933_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d027249_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d029015_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d033286_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d051161_P003	AT3G10340.1	21798944
AT2G37040.1	Zm00001d051163_P002	AT3G10340.1	21798944
AT2G37040.1	Zm00001d051164_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d051166_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d053619_P001	AT3G10340.1	21798944
AT3G10340.1	Zm00001d036925_P001	AT1G15670.1	21798944
AT3G53260.1	Zm00001d003015_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d003016_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d017274_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d017275_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d017276_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d017279_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d020933_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d027249_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d029015_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d033286_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d051161_P003	AT3G10340.1	21798944
AT3G53260.1	Zm00001d051163_P002	AT3G10340.1	21798944
AT3G53260.1	Zm00001d051164_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d051166_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d053619_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d003015_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d003016_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d017274_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d017275_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d017276_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d017279_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d020933_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d027249_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d029015_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d033286_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d051161_P003	AT3G53260.1	21798944
AT3G53260.1	Zm00001d051163_P002	AT3G53260.1	21798944
AT3G53260.1	Zm00001d051164_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d051166_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d053619_P001	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07175	Sorghum	cytosol, peroxisome, plastid	95.97	96.1
Zm00001d051163_P002	Maize	peroxisome	94.58	94.71
Os02t0626400-01	Rice	mitochondrion, plasma membrane	92.91	93.04
TraesCS6B01G258500.1	Wheat	extracellular, unclear	90.54	91.18
TraesCS6D01G212400.1	Wheat	cytosol, peroxisome, plastid	90.26	90.9
HORVU0Hr1G016330.1	Barley	cytosol, peroxisome, plastid	90.26	90.77
TraesCS6A01G222800.1	Wheat	cytosol, peroxisome, plastid	90.13	90.76
Zm00001d017279_P001	Maize	cytosol, peroxisome, plastid	86.93	87.41
Zm00001d017276_P001	Maize	peroxisome	85.54	87.36
Zm00001d051166_P001	Maize	extracellular	86.37	86.73
Zm00001d003015_P001	Maize	peroxisome	85.12	85.59
Solyc03g036480.1.1	Tomato	peroxisome	11.96	84.31
Zm00001d029015_P001	Maize	peroxisome	45.06	81.41
Zm00001d051164_P001	Maize	peroxisome	17.66	80.89
Zm00001d027249_P001	Maize	peroxisome	24.34	78.48
Solyc03g036470.1.1	Tomato	mitochondrion	24.9	78.17
PGSC0003DMT400080765	Potato	peroxisome	47.29	78.16
Zm00001d033286_P001	Maize	peroxisome	75.66	77.94
CDY18464	Canola	peroxisome	45.76	77.78
Solyc03g042560.1.1	Tomato	peroxisome	50.07	77.25
PGSC0003DMT400055489	Potato	mitochondrion	41.72	76.73
Solyc10g086180.1.1	Tomato	extracellular	74.83	75.67
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	74.69	75.53
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	72.04	75.4
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	75.24	75.03
CDX78161	Canola	cytosol	51.74	75.0
CDX73567	Canola	cytosol	51.74	75.0
CDX67566	Canola	cytosol	51.18	74.95
Solyc09g007910.2.1	Tomato	extracellular, nucleus	75.1	74.9
Solyc09g007920.2.1	Tomato	extracellular, nucleus	75.1	74.9
Zm00001d020933_P001	Maize	mitochondrion	21.98	74.88
AT3G10340.1	Thale cress	peroxisome	73.3	74.54
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	74.83	74.52
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	74.41	74.41
Zm00001d017274_P001	Maize	plasma membrane	72.74	74.4
CDY00922	Canola	cytosol	73.02	74.36
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	71.21	74.31
CDY66761	Canola	cytosol, peroxisome, plastid	53.55	74.18
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	74.41	74.1
Bra029831.1-P	Field mustard	cytosol	72.74	74.08
Zm00001d051161_P003	Maize	plastid	72.18	73.83
CDY08611	Canola	cytosol	72.46	73.8
KRG91925	Soybean	cytosol, peroxisome, plastid	73.57	73.78
Solyc09g007890.1.1	Tomato	plastid	73.71	73.71
Bra003126.1-P	Field mustard	cytosol	72.32	73.55
CDX76219	Canola	cytosol	53.27	73.37
Solyc03g078280.1.1	Tomato	peroxisome	26.15	72.87
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	73.44	72.83
AT3G53260.1	Thale cress	cytosol	72.6	72.8
Bra006985.1-P	Field mustard	cytosol	70.65	71.95
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	36.44	71.78
Bra039777.1-P	Field mustard	peroxisome	50.35	70.98
CDX99621	Canola	mitochondrion	53.13	69.84
Zm00001d053619_P001	Maize	mitochondrion	41.03	69.74
AT5G04230.2	Thale cress	peroxisome	66.62	68.62
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	13.63	67.59
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	64.81	66.76
CDY15917	Canola	cytosol, peroxisome, plastid	64.67	66.62
Bra005221.1-P	Field mustard	peroxisome	33.8	65.5
Zm00001d003016_P001	Maize	plastid	71.49	65.15
CDY18463	Canola	peroxisome	23.64	64.64
CDY13306	Canola	peroxisome	18.78	64.29
CDX91331	Canola	peroxisome	33.52	63.42
CDX74991	Canola	peroxisome	33.52	63.42
PGSC0003DMT400055529	Potato	cytosol	14.46	62.28
VIT_11s0016g01640.t01	Wine grape	peroxisome	54.1	58.5
Solyc03g071870.1.1	Tomato	peroxisome	13.91	58.14
GSMUA_Achr9P15990_001	Banana	peroxisome	55.91	57.18
Solyc10g011920.1.1	Tomato	cytosol	9.74	55.12
Solyc10g011930.1.1	Tomato	cytosol	9.74	55.12
CDY61769	Canola	peroxisome	18.64	52.96
Bra028793.1-P	Field mustard	peroxisome	21.42	52.38
VIT_11s0016g01520.t01	Wine grape	peroxisome	61.89	49.72
VIT_11s0016g01660.t01	Wine grape	peroxisome	11.54	47.7
VIT_11s0016g01510.t01	Wine grape	peroxisome	14.46	29.3

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:100273579
MapMan:9.2.1.1.1	UniProt:A0A1D6HDL5	ProteinID:AQK72771.1	InterPro:Aromatic_Lyase	InterPro:Fumarase/histidase_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006559
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009698	GO:GO:0009800
GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144
InterPro:IPR024083	InterPro:L-Aspartase-like	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF22
InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	TIGRFAMs:TIGR01226	UniParc:UPI000220D367
EnsemblPlantsGene:Zm00001d017275	EnsemblPlants:Zm00001d017275_P001	EnsemblPlants:Zm00001d017275_T001	SEG:seg	:	:

Description

phenylalanine ammonia lyase9

Coordinates

chr5:-:191467430..191471500

Molecular Weight (calculated)

77405.9 Da

IEP (calculated)

6.615

GRAVY (calculated)

-0.100

Length

719 amino acids

Sequence
(BLAST)

001: MECETGLVRS LNGEGLCMSA AAAAPRADAL NWGKAAEDLS GSHLDEVKRM VVEFREPLVR IQGASLSIGQ VAAVAAGAGG EARVELDESA RGRVKASSDW
101: VMSSMMNGTD SYGVTTGFGA TSHRRTKEGG ALQRELIRFL NAGAFGTGAD GHVLPAEATR AAMLVRINTL LQGYSGIRFE ILEAIAKLLN ANVTPCLPLR
201: GTITASGDLV PLSYIAGLIT GRQNSVAVGP DGRKVGAAEA FRIAGIEHGF FELQPKEGLA MVNGTAVGSG LASTVLFEAN VLAVMAEVIS AVFCEVMTGK
301: PEFTDHLTHK LKHHPGQIEA AAIMEHVLEG SSYMKLAKKL GELDPLMKPK QDRYALRTSP QWLGPQIEVI RFATKSIERE INSVNDNPLI DVSRGKALHG
401: GNFQGTPIGV SMDNTRLALA AIGKLMFAQF SELVNDYYNN GLPSNLSGGR NPSLDYGFKG AEIAMASYCS ELQFLGNPVT NHVQSAEQHN QDVNSLGLIS
501: SRKTAEAVDI LKLMTSTFLI ALCQAIDLRH LEENVKAAVK NCVTQVAKKS LSLNARGGLH NARFCEKDLQ TAIDREAVFA YADDPCSPNY PLMQKLRAVL
601: VEHALANGDA ERAAETSIFA KVAEFEQQVR AALPKEVEAA RAAVESGSPL VPNRIRECRS YPLYRFVRED VGTEYLTGER TRSPGEELNK VLVAINQRKH
701: IDPLLECLKE WNGAPLPLC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.