Factsheet for Solyc09g007910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g036470.1.1
Solyc03g036480.1.1
Solyc03g042560.1.1
Solyc03g071860.2.1
Solyc03g071870.1.1
Solyc03g078270.1.1
Solyc03g078280.1.1
Solyc03g120320.1.1
Solyc03g120330.1.1
Solyc06g066770.1.1
Solyc09g007890.1.1
Solyc09g007900.2.1
Solyc09g007910.2.1
Solyc09g007920.2.1
Solyc10g011920.1.1
Solyc10g011930.1.1
Solyc10g086180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	Solyc03g036470.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g036480.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g042560.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g071860.2.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g071870.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g078270.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g078280.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc09g007890.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc09g007900.2.1	AT2G37040.1	21798944
AT2G37040.1	Solyc09g007910.2.1	AT2G37040.1	21798944
AT2G37040.1	Solyc09g007920.2.1	AT2G37040.1	21798944
AT2G37040.1	Solyc10g011920.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc10g011930.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc10g086180.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g036470.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g036480.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g042560.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g071860.2.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g071870.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g078270.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g078280.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc09g007890.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc09g007900.2.1	AT3G10340.1	21798944
AT2G37040.1	Solyc09g007910.2.1	AT3G10340.1	21798944
AT2G37040.1	Solyc09g007920.2.1	AT3G10340.1	21798944
AT2G37040.1	Solyc10g011920.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc10g011930.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc10g086180.1.1	AT3G10340.1	21798944
AT3G10340.1	Solyc03g120320.1.1	AT1G15670.1	21798944
AT3G10340.1	Solyc03g120330.1.1	AT1G15670.1	21798944
AT3G10340.1	Solyc06g066770.1.1	AT1G15670.1	21798944
AT3G53260.1	Solyc03g036470.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g036480.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g042560.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g071860.2.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g071870.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g078270.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g078280.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc09g007890.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc09g007900.2.1	AT3G10340.1	21798944
AT3G53260.1	Solyc09g007910.2.1	AT3G10340.1	21798944
AT3G53260.1	Solyc09g007920.2.1	AT3G10340.1	21798944
AT3G53260.1	Solyc10g011920.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc10g011930.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc10g086180.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g036470.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g036480.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g042560.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g071860.2.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g071870.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g078270.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g078280.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc09g007890.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc09g007900.2.1	AT3G53260.1	21798944
AT3G53260.1	Solyc09g007910.2.1	AT3G53260.1	21798944
AT3G53260.1	Solyc09g007920.2.1	AT3G53260.1	21798944
AT3G53260.1	Solyc10g011920.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc10g011930.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc10g086180.1.1	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007920.2.1	Tomato	extracellular, nucleus	97.92	97.92
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	97.78	97.78
Solyc09g007890.1.1	Tomato	plastid	94.04	94.3
Solyc03g036470.1.1	Tomato	mitochondrion	29.82	93.89
Solyc03g042560.1.1	Tomato	peroxisome	60.19	93.13
Solyc03g036480.1.1	Tomato	peroxisome	12.62	89.22
Solyc03g078280.1.1	Tomato	peroxisome	31.76	88.76
Solyc10g086180.1.1	Tomato	extracellular	87.38	88.61
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	43.69	86.3
CDY18464	Canola	peroxisome	49.65	84.63
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	78.64	82.53
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	82.52	82.41
GSMUA_Achr5P03950_001	Banana	cytosol, peroxisome, plastid	74.34	82.33
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	80.72	82.09
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	82.25	82.02
GSMUA_Achr1P09070_001	Banana	peroxisome	74.34	81.96
CDX78161	Canola	cytosol	56.31	81.85
CDY66761	Canola	cytosol, peroxisome, plastid	58.81	81.7
CDX73567	Canola	cytosol	56.03	81.45
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	81.41	80.97
CDX67566	Canola	cytosol	55.06	80.86
Bra003126.1-P	Field mustard	cytosol	79.2	80.76
KRG91925	Soybean	cytosol, peroxisome, plastid	80.31	80.75
CDX76219	Canola	cytosol	58.39	80.65
GSMUA_Achr5P18560_001	Banana	cytosol, peroxisome, plastid	72.82	80.52
AT3G10340.1	Thale cress	peroxisome	78.92	80.48
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	73.09	80.46
GSMUA_Achr8P18960_001	Banana	cytosol, peroxisome, plastid	66.99	80.37
Bra029831.1-P	Field mustard	cytosol	78.36	80.03
CDY08611	Canola	cytosol	78.36	80.03
GSMUA_Achr2P00240_001	Banana	peroxisome	72.4	79.94
AT3G53260.1	Thale cress	cytosol	79.33	79.78
CDY00922	Canola	cytosol	77.67	79.32
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	15.95	79.31
Bra006985.1-P	Field mustard	cytosol	77.53	79.18
TraesCS2B01G398100.1	Wheat	cytosol, peroxisome, plastid	56.59	78.46
GSMUA_Achr11P...	Banana	peroxisome	69.21	77.61
Bra039777.1-P	Field mustard	peroxisome	54.78	77.45
TraesCS1D01G039300.1	Wheat	mitochondrion	56.31	77.04
TraesCS2D01G204400.1	Wheat	peroxisome	71.29	76.95
Bra005221.1-P	Field mustard	peroxisome	39.39	76.55
Solyc03g071870.1.1	Tomato	peroxisome	18.17	76.16
Zm00001d003015_P001	Maize	peroxisome	75.31	75.94
HORVU2Hr1G089540.1	Barley	peroxisome	49.38	75.91
TraesCS2D01G377600.1	Wheat	plastid	74.62	75.88
HORVU2Hr1G038120.1	Barley	cytosol, peroxisome, plastid	74.34	75.81
EES05455	Sorghum	cytosol, peroxisome, plastid	75.03	75.77
EES07176	Sorghum	cytosol, peroxisome, plastid	75.03	75.77
EES07177	Sorghum	cytosol, peroxisome, plastid	75.03	75.77
Zm00001d017276_P001	Maize	peroxisome	73.93	75.71
Os04t0518400-01	Rice	extracellular, plasma membrane	74.9	75.63
Os02t0626400-01	Rice	mitochondrion, plasma membrane	75.31	75.63
TraesCS2B01G398000.2	Wheat	plastid	74.76	75.6
TraesCS2D01G377200.1	Wheat	cytosol, peroxisome, plastid	74.76	75.6
TraesCS5B01G468400.1	Wheat	peroxisome	57.84	75.54
TraesCS2D01G204700.1	Wheat	peroxisome	74.06	75.53
TraesCS5B01G468300.1	Wheat	cytosol, peroxisome, plastid	74.06	75.53
TraesCS1B01G122800.1	Wheat	cytosol, peroxisome, plastid	74.06	75.42
TraesCS1D01G103500.1	Wheat	cytosol, peroxisome, plastid	74.06	75.42
HORVU1Hr1G022060.1	Barley	cytosol, peroxisome, plastid	73.93	75.39
TraesCS1B01G048400.2	Wheat	cytosol, peroxisome, plastid	73.93	75.39
TraesCS2B01G224000.1	Wheat	peroxisome	73.93	75.39
TraesCS2D01G218700.1	Wheat	peroxisome	73.93	75.39
OQU81984	Sorghum	peroxisome	74.48	75.21
TraesCS1B01G048300.1	Wheat	cytosol, peroxisome, plastid	74.34	75.18
TraesCS2B01G398400.1	Wheat	cytosol, peroxisome, plastid	74.34	75.18
TraesCS2D01G377400.1	Wheat	cytosol, peroxisome, plastid	74.34	75.18
TraesCS2D01G377500.1	Wheat	cytosol, peroxisome, plastid	74.34	75.18
TraesCS1D01G039400.1	Wheat	golgi	73.65	75.11
Zm00001d017275_P001	Maize	extracellular	74.9	75.1
TraesCS2B01G224300.1	Wheat	cytosol, peroxisome, plastid	73.51	75.07
TraesCS1B01G048100.1	Wheat	cytosol, peroxisome, plastid	74.34	75.07
TraesCS6B01G258500.1	Wheat	extracellular, unclear	74.34	75.07
EES07175	Sorghum	cytosol, peroxisome, plastid	74.76	75.07
Zm00001d051163_P002	Maize	peroxisome	74.76	75.07
Os02t0627100-01	Rice	plasma membrane	74.2	75.04
TraesCS2B01G398200.1	Wheat	cytosol, peroxisome, plastid	74.2	75.04
CDX74991	Canola	peroxisome	39.53	75.0
CDX91331	Canola	peroxisome	39.53	75.0
HORVU0Hr1G016330.1	Barley	cytosol, peroxisome, plastid	74.34	74.97
TraesCS1D01G039500.1	Wheat	cytosol, peroxisome, plastid	74.2	74.93
HORVU6Hr1G058840.1	Barley	cytosol, peroxisome, plasma membrane	73.93	74.86
Zm00001d017279_P001	Maize	cytosol, peroxisome, plastid	74.2	74.83
TraesCS6D01G212400.1	Wheat	cytosol, peroxisome, plastid	74.06	74.79
TraesCS1B01G048200.1	Wheat	cytosol, peroxisome, plastid	73.93	74.65
TraesCS1B01G048500.1	Wheat	cytosol, peroxisome, plastid	73.93	74.65
Zm00001d051166_P001	Maize	extracellular	74.06	74.58
Os05t0427400-00	Rice	cytosol, peroxisome, plastid	73.93	74.44
TraesCS6B01G258600.1	Wheat	cytosol, peroxisome, plasma membrane	73.51	74.44
CDX99621	Canola	mitochondrion	56.31	74.22
TraesCS6D01G212500.1	Wheat	peroxisome	73.09	74.02
CDY18463	Canola	peroxisome	26.77	73.38
AT5G04230.2	Thale cress	peroxisome	71.01	73.35
Solyc10g011930.1.1	Tomato	cytosol	12.9	73.23
Os02t0626600-00	Rice	plasma membrane	72.12	72.73
CDY13306	Canola	peroxisome	21.08	72.38
Zm00001d029015_P001	Maize	peroxisome	39.53	71.61
TraesCS2B01G398300.2	Wheat	peroxisome	36.34	71.2
Solyc10g011920.1.1	Tomato	cytosol	12.48	70.87
TraesCS2B01G020100.1	Wheat	peroxisome	66.71	70.63
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	68.38	70.63
CDY15917	Canola	cytosol, peroxisome, plastid	68.24	70.49
Os04t0518100-01	Rice	plasma membrane	68.93	70.3
HORVU2Hr1G089440.9	Barley	plasma membrane	74.76	70.27
Os02t0626100-01	Rice	extracellular, plasma membrane	68.24	70.19
Zm00001d017274_P001	Maize	plasma membrane	68.38	70.13
EES12521	Sorghum	cytosol	68.24	69.99
EES07174	Sorghum	cytosol, peroxisome, plastid	67.96	69.6
TraesCS6D01G212200.1	Wheat	extracellular, golgi, unclear	67.96	69.6
Zm00001d051161_P003	Maize	plastid	67.82	69.56
TraesCS6B01G258400.2	Wheat	cytosol, peroxisome, plastid	67.82	69.46
TraesCS3B01G027800.1	Wheat	mitochondrion	52.29	69.3
HORVU2Hr1G038140.1	Barley	mitochondrion, plastid	69.49	69.29
Zm00001d033286_P001	Maize	peroxisome	66.44	68.62
Os12t0520200-01	Rice	plasma membrane	64.08	67.94
EER93773	Sorghum	peroxisome	65.46	66.57
Zm00001d027249_P001	Maize	peroxisome	20.53	66.37
TraesCS3D01G016300.1	Wheat	peroxisome	63.38	66.33
HORVU3Hr1G005330.2	Barley	cytosol, peroxisome, plasma membrane	63.25	66.09
TraesCS3B01G053900.1	Wheat	peroxisome	63.11	66.04
Zm00001d020933_P001	Maize	mitochondrion	19.28	65.88
TraesCS3D01G016500.1	Wheat	peroxisome	61.44	64.3
HORVU6Hr1G058820.2	Barley	mitochondrion	61.72	62.76
Zm00001d003016_P001	Maize	plastid	68.65	62.74
Zm00001d053619_P001	Maize	mitochondrion	35.37	60.28
Zm00001d051164_P001	Maize	peroxisome	12.9	59.24
GSMUA_Achr9P15990_001	Banana	peroxisome	56.17	57.61
CDY61769	Canola	peroxisome	19.0	54.15
Bra028793.1-P	Field mustard	peroxisome	21.64	53.06
HORVU2Hr1G062750.1	Barley	mitochondrion	13.45	52.72
Os12t0461300-00	Rice	plastid	16.78	47.83
Os08t0308300-00	Rice	plastid	10.54	40.43

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	MapMan:9.2.1.1.1
InterPro:Aromatic_Lyase	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841
GO:GO:0019748	GO:GO:0032991	GO:GO:0043234	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083
UniProt:K4CQI0	InterPro:L-Aspartase-like	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF32
InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	EnsemblPlantsGene:Solyc09g007910.2	EnsemblPlants:Solyc09g007910.2.1
TIGRFAMs:TIGR01226	UniParc:UPI000276BB04	:	:	:	:

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:K4CQI0]

Coordinates

chr9:+:1429132..1437334

Molecular Weight (calculated)

78448.1 Da

IEP (calculated)

6.469

GRAVY (calculated)

-0.182

Length

721 amino acids

Sequence
(BLAST)

001: MASSIVQNGH VNGEAMDLCK KSINVNDPLN WEMAAESLRG SHLDEVKKMV DEFRKPIVKL GGETLTVAQV ASIANVDNKS NGVKVELSES ARAGVKASSD
101: WVMDSMGKGT DSYGVTTGFG ATSHRRTKNG GALQKELIRF LNAGVFGNGT ESSHTLPHSA TRAAMLVRIN TLLQGYSGIR FEILEAITKL INSNITPCLP
201: LRGTITASGD LVPLSYIAGL LTGRPNSKAV GPNGEKLNAE EAFHVAGVTS GFFELQPKEG LALVNGTAVG SGMASMVLFE SNILAVMSEV LSAIFAEVMN
301: GKPEFTDYLT HKLKHHPGQI EAAAIMEHIL DGSSYVKEAQ KLHEMDPLQK PKQDRYALRT SPQWLGPQIE VIRAATKMIE REINSVNDNP LIDVSRNKAL
401: HGGNFQGTPI GVSMDNTRLA LASIGKLMFA QFSELVNDYY NNGLPSNLTA GRNPSLDYGF KGAEIAMASY CSELQFLANP VTNHVQSAEQ HNQDVNSLGL
501: ISARKTAEAV DILKLMSSTY LVALCQAIDL RHLEENLKNA VKNTVSQVAK KTLAMGANGE LHPARFCEKE LLQVVEREYL FTYADDPCSS TYPLMQKLRQ
601: VLVDHAMKNG ESEKNVNSSI FQKIVAFEDE LKAVLPKEVE SARAVVESGN PAIPNRITEC RSYPLYRLVR QEVGTELLTG EKVRSPGEEI DKVFTAFCNG
701: QIIDPLLECL KSWNGAPIPI C

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.