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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 3
  • vacuole 1
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, plastid, vacuole
BaCelLo:plastid
EpiLoc:vacuole
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
TargetP:plastid
YLoc:mitochondrion
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0208700-00
Os02t0626100-01
Os02t0626400-01
Os02t0626600-00
Os02t0627100-01
Os04t0518100-01
Os04t0518400-01
Os05t0427400-00
Os06t0594400-02
Os08t0308300-00
Os12t0461300-00
Os12t0520200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37040.1 Os02t0626100-01 AT2G37040.1 21798944
AT2G37040.1 Os02t0626400-01 AT2G37040.1 21798944
AT2G37040.1 Os02t0626600-00 AT2G37040.1 21798944
AT2G37040.1 Os02t0627100-01 AT2G37040.1 21798944
AT2G37040.1 Os04t0518100-01 AT2G37040.1 21798944
AT2G37040.1 Os04t0518400-01 AT2G37040.1 21798944
AT2G37040.1 Os05t0427400-00 AT2G37040.1 21798944
AT2G37040.1 Os08t0308300-00 AT2G37040.1 21798944
AT2G37040.1 Os12t0461300-00 AT2G37040.1 21798944
AT2G37040.1 Os12t0520200-01 AT2G37040.1 21798944
AT2G37040.1 Os02t0626100-01 AT3G10340.1 21798944
AT2G37040.1 Os02t0626400-01 AT3G10340.1 21798944
AT2G37040.1 Os02t0626600-00 AT3G10340.1 21798944
AT2G37040.1 Os02t0627100-01 AT3G10340.1 21798944
AT2G37040.1 Os04t0518100-01 AT3G10340.1 21798944
AT2G37040.1 Os04t0518400-01 AT3G10340.1 21798944
AT2G37040.1 Os05t0427400-00 AT3G10340.1 21798944
AT2G37040.1 Os08t0308300-00 AT3G10340.1 21798944
AT2G37040.1 Os12t0461300-00 AT3G10340.1 21798944
AT2G37040.1 Os12t0520200-01 AT3G10340.1 21798944
AT3G10340.1 Os02t0208700-00 AT1G15670.1 21798944
AT3G10340.1 Os06t0594400-02 AT1G15670.1 21798944
AT3G53260.1 Os02t0626100-01 AT3G10340.1 21798944
AT3G53260.1 Os02t0626400-01 AT3G10340.1 21798944
AT3G53260.1 Os02t0626600-00 AT3G10340.1 21798944
AT3G53260.1 Os02t0627100-01 AT3G10340.1 21798944
AT3G53260.1 Os04t0518100-01 AT3G10340.1 21798944
AT3G53260.1 Os04t0518400-01 AT3G10340.1 21798944
AT3G53260.1 Os05t0427400-00 AT3G10340.1 21798944
AT3G53260.1 Os08t0308300-00 AT3G10340.1 21798944
AT3G53260.1 Os12t0461300-00 AT3G10340.1 21798944
AT3G53260.1 Os12t0520200-01 AT3G10340.1 21798944
AT3G53260.1 Os02t0626100-01 AT3G53260.1 21798944
AT3G53260.1 Os02t0626400-01 AT3G53260.1 21798944
AT3G53260.1 Os02t0626600-00 AT3G53260.1 21798944
AT3G53260.1 Os02t0627100-01 AT3G53260.1 21798944
AT3G53260.1 Os04t0518100-01 AT3G53260.1 21798944
AT3G53260.1 Os04t0518400-01 AT3G53260.1 21798944
AT3G53260.1 Os05t0427400-00 AT3G53260.1 21798944
AT3G53260.1 Os08t0308300-00 AT3G53260.1 21798944
AT3G53260.1 Os12t0461300-00 AT3G53260.1 21798944
AT3G53260.1 Os12t0520200-01 AT3G53260.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d017276_P001 Maize peroxisome 87.83 89.2
EES07177 Sorghum cytosol, peroxisome, plastid 88.81 88.94
EES07176 Sorghum cytosol, peroxisome, plastid 88.81 88.94
EES05455 Sorghum cytosol, peroxisome, plastid 88.81 88.94
Os02t0627100-01 Rice plasma membrane 88.25 88.5
Zm00001d017279_P001 Maize cytosol, peroxisome, plastid 88.25 88.25
Zm00001d051166_P001 Maize extracellular 87.41 87.29
Os05t0427400-00 Rice cytosol, peroxisome, plastid 86.99 86.87
Os04t0518400-01 Rice extracellular, plasma membrane 84.34 84.45
Os02t0626400-01 Rice mitochondrion, plasma membrane 83.92 83.57
Solyc03g036480.1.1 Tomato peroxisome 11.89 83.33
CDY18464 Canola peroxisome 46.85 79.2
Solyc03g036470.1.1 Tomato mitochondrion 25.17 78.6
PGSC0003DMT400080765 Potato peroxisome 47.55 78.16
Solyc03g042560.1.1 Tomato peroxisome 50.49 77.47
PGSC0003DMT400055489 Potato mitochondrion 41.68 76.21
KRH34854 Soybean cytosol, endoplasmic reticulum, peroxisome 70.21 73.07
Os02t0626100-01 Rice extracellular, plasma membrane 71.33 72.75
Solyc10g086180.1.1 Tomato extracellular 72.17 72.57
Os04t0518100-01 Rice plasma membrane 71.75 72.56
Solyc09g007900.2.1 Tomato cytosol, endoplasmic reticulum, peroxisome 73.01 72.4
PGSC0003DMT400080548 Potato cytosol, peroxisome, plastid 71.89 72.29
Solyc09g007920.2.1 Tomato extracellular, nucleus 72.87 72.26
AT3G10340.1 Thale cress peroxisome 71.33 72.14
Solyc09g007910.2.1 Tomato extracellular, nucleus 72.73 72.12
PGSC0003DMT400055531 Potato cytosol, peroxisome, plastid 72.45 72.04
PGSC0003DMT400049886 Potato nucleus, peroxisome, plastid 69.37 71.99
PGSC0003DMT400055488 Potato cytosol, peroxisome, plastid 72.59 71.88
Solyc03g071860.2.1 Tomato endoplasmic reticulum 36.64 71.78
Bra017210.1-P Field mustard cytosol, peroxisome, plastid 72.45 71.75
CDX67566 Canola cytosol 49.23 71.69
Os12t0520200-01 Rice plasma membrane 68.11 71.62
CDX73567 Canola cytosol 49.65 71.57
Bra029831.1-P Field mustard cytosol 70.49 71.39
CDX78161 Canola cytosol 49.51 71.37
CDY00922 Canola cytosol 70.35 71.25
CDY08611 Canola cytosol 70.21 71.1
Bra003126.1-P Field mustard cytosol 70.21 71.0
KRG91925 Soybean cytosol, peroxisome, plastid 71.19 70.99
Solyc03g078280.1.1 Tomato peroxisome 25.59 70.93
AT3G53260.1 Thale cress cytosol 70.77 70.57
CDY66761 Canola cytosol, peroxisome, plastid 51.05 70.33
AT2G37040.1 Thale cress cytosol, peroxisome, plastid 71.19 70.21
CDX99621 Canola mitochondrion 53.71 70.2
Solyc09g007890.1.1 Tomato plastid 70.49 70.1
Bra006985.1-P Field mustard cytosol 68.95 69.83
CDX76219 Canola cytosol 50.77 69.54
Solyc03g078270.1.1 Tomato endoplasmic reticulum 13.99 68.97
Bra039777.1-P Field mustard peroxisome 47.83 67.06
AT5G04230.2 Thale cress peroxisome 64.2 65.76
PGSC0003DMT400055529 Potato cytosol 14.96 64.07
CDY15917 Canola cytosol, peroxisome, plastid 62.52 64.04
Bra030322.1-P Field mustard cytosol, peroxisome, plastid 62.38 63.9
Bra005221.1-P Field mustard peroxisome 31.19 60.11
CDX74991 Canola peroxisome 30.77 57.89
CDX91331 Canola peroxisome 30.77 57.89
VIT_11s0016g01640.t01 Wine grape peroxisome 53.01 56.99
CDY18463 Canola peroxisome 20.56 55.89
CDY13306 Canola peroxisome 16.22 55.24
GSMUA_Achr9P15990_001 Banana peroxisome 53.71 54.62
Os12t0461300-00 Rice plastid 18.6 52.57
VIT_11s0016g01660.t01 Wine grape peroxisome 12.45 51.15
Bra028793.1-P Field mustard peroxisome 20.98 51.02
CDY61769 Canola peroxisome 18.04 50.99
VIT_11s0016g01520.t01 Wine grape peroxisome 60.98 48.72
HORVU2Hr1G062750.1 Barley mitochondrion 11.89 46.2
Solyc03g071870.1.1 Tomato peroxisome 11.05 45.93
Os08t0308300-00 Rice plastid 11.47 43.62
Solyc10g011930.1.1 Tomato cytosol 6.85 38.58
Solyc10g011920.1.1 Tomato cytosol 6.57 37.01
VIT_11s0016g01510.t01 Wine grape peroxisome 12.17 24.51
Protein Annotations
KEGG:00360+4.3.1.24KEGG:00940+4.3.1.24Gene3D:1.10.274.20Gene3D:1.10.275.10Gene3D:1.20.200.10MapMan:9.2.1.1.1
UniProt:A0A0P0VM80InterPro:Aromatic_LyaseProteinID:BAS79867.1InterPro:Fumarase/histidase_NGO:GO:0003674GO:GO:0003824
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006559GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009698GO:GO:0009800GO:GO:0009987
GO:GO:0016829GO:GO:0016841GO:GO:0019748GO:GO:0045548InterPro:IPR023144InterPro:IPR024083
InterPro:L-Aspartase-likeEnsemblPlantsGene:Os02g0626600EnsemblPlants:Os02t0626600-00PFAM:PF00221ScanProsite:PS00488PANTHER:PTHR10362
PANTHER:PTHR10362:SF31InterPro:Phe/His_NH3-lyase_ASInterPro:Phe_NH3-lyaseInterPro:Phe_NH3-lyase_shielding_dom_sfSUPFAM:SSF48557TIGRFAMs:TIGR01226
UniParc:UPI000393BE80SEG:seg::::
Description
Phenylalanine ammonia-lyase 05Similar to Phenylalanine ammonia-lyase. (Os02t0626600-00)
Coordinates
chr2:-:24993130..24995329
Molecular Weight (calculated)
76664.7 Da
IEP (calculated)
6.937
GRAVY (calculated)
-0.147
Length
715 amino acids
Sequence
(BLAST)
001: YPPAHLAQSS VLSGRLANCN GVRERSGCCR WHQRPLHGGA PRRPAELGEG GGGDVGEPPR RGEAHGGRVA AVAAAGEARV ELDESARERV KASSDWVMNS
101: MMNGTDSYGV TTGFGATSHR RTKEGGALQR ELIRFLNAGA FGTGTDGHVL SAEATRAAML VRINTLLQGY SGIRFEILEA ITKLLNANVT PCLPLRGTVT
201: ASGDLVPLSY IAGLVTGREN SVAVAPDGSK VNAAEAFKIA GIQGGFFELQ PKEGLAMVNG TAVGSGLAST VLFEANILAV LAEVLSAVFC EVMNGKPEYT
301: DHLTHKLKHH PGQIEAAAIM EHILEGSSYM KLAKKLGELD PLMKPKQDRY ALRTSPQWLG PQIEVIRAAT KSIEREINSV NDNPLIDVSR DKALHGGNFQ
401: GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDYYNNGLPS NLSGGRNPSL DYGFKGAEIA MASYCSELQF LGNPVTNHVQ SAEQHNQDVN SLGLISSRKT
501: AEAVEILKLM SSTFLVALCQ AIDLRQIEEN VKSAVKSCVM TVARKTLSTS ATGGLHAARF CEKDLLQEID REAVFAYADD PCSANYPLMK KLRNVLVERA
601: LANGAAEFNA ETSVFAKVAQ FEEELRAALP AAVLAARAAV ENGTAATPNR ITECRSYPLY RFVREELGTA YLTGEKTRSP GEELNKVLVA INQGKHIDPL
701: LECLKEWNGA PLPIC
Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
Arabidopsis Description
PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.