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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • plastid 1
  • peroxisome 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:peroxisome
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra026116.1-P
Bra026753.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G10340.1 Bra026116.1-P AT1G15670.1 21798944
AT3G10340.1 Bra026753.1-P AT1G15670.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08611 Canola cytosol 98.87 98.87
CDY00922 Canola cytosol 97.45 97.45
AT3G10340.1 Thale cress peroxisome 91.22 91.09
Solyc03g036480.1.1 Tomato peroxisome 12.18 84.31
GSMUA_Achr1P09070_001 Banana peroxisome 75.92 81.96
PGSC0003DMT400080765 Potato peroxisome 50.42 81.84
Solyc03g042560.1.1 Tomato peroxisome 53.4 80.9
Solyc03g036470.1.1 Tomato mitochondrion 26.2 80.79
KRH34854 Soybean cytosol, endoplasmic reticulum, peroxisome 78.33 80.49
GSMUA_Achr5P03950_001 Banana cytosol, peroxisome, plastid 74.22 80.49
PGSC0003DMT400055489 Potato mitochondrion 44.48 80.31
GSMUA_Achr8P18960_001 Banana cytosol, peroxisome, plastid 67.99 79.87
GSMUA_Achr2P00240_001 Banana peroxisome 73.65 79.63
GSMUA_Achr5P18560_001 Banana cytosol, peroxisome, plastid 73.37 79.45
GSMUA_Achr11P... Banana cytosol, peroxisome, plastid 73.65 79.39
Bra003126.1-P Field mustard cytosol 79.46 79.35
PGSC0003DMT400080548 Potato cytosol, peroxisome, plastid 79.6 79.04
Solyc10g086180.1.1 Tomato extracellular 79.32 78.76
Bra017210.1-P Field mustard cytosol, peroxisome, plastid 80.45 78.67
Solyc09g007910.2.1 Tomato extracellular, nucleus 80.03 78.36
Solyc09g007920.2.1 Tomato extracellular, nucleus 80.03 78.36
PGSC0003DMT400055488 Potato cytosol, peroxisome, plastid 80.03 78.25
KRG91925 Soybean cytosol, peroxisome, plastid 79.46 78.24
Solyc09g007900.2.1 Tomato cytosol, endoplasmic reticulum, peroxisome 79.89 78.22
Bra006985.1-P Field mustard cytosol 78.19 78.19
TraesCS1A01G094900.1 Wheat cytosol, peroxisome, plastid 54.96 77.91
Bra030322.1-P Field mustard cytosol, peroxisome, plastid 76.77 77.65
PGSC0003DMT400049886 Potato nucleus, peroxisome, plastid 75.64 77.5
PGSC0003DMT400055531 Potato cytosol, peroxisome, plastid 78.75 77.33
Solyc09g007890.1.1 Tomato plastid 78.47 77.05
TraesCS2B01G398100.1 Wheat cytosol, peroxisome, plastid 56.66 76.92
Solyc03g078280.1.1 Tomato peroxisome 27.76 75.97
GSMUA_Achr11P... Banana peroxisome 68.98 75.74
HORVU2Hr1G089540.1 Barley peroxisome 50.14 75.48
Bra039777.1-P Field mustard peroxisome 54.25 75.1
Solyc03g071860.2.1 Tomato endoplasmic reticulum 38.81 75.07
TraesCS1D01G039300.1 Wheat mitochondrion 55.95 74.95
TraesCS5B01G468400.1 Wheat peroxisome 58.5 74.82
TraesCS2D01G377600.1 Wheat plastid 75.07 74.75
TraesCS2D01G204400.1 Wheat peroxisome 70.68 74.7
Bra005221.1-P Field mustard peroxisome 39.24 74.66
TraesCS2A01G381100.1 Wheat plastid 74.93 74.19
TraesCS2B01G398000.2 Wheat plastid 74.79 74.05
Os04t0518400-01 Rice extracellular, plasma membrane 74.79 73.95
TraesCS2D01G377500.1 Wheat cytosol, peroxisome, plastid 74.65 73.91
OQU81984 Sorghum peroxisome 74.65 73.81
TraesCS2A01G381000.1 Wheat plastid 74.5 73.77
TraesCS2B01G398400.1 Wheat cytosol, peroxisome, plastid 74.5 73.77
TraesCS2D01G377200.1 Wheat cytosol, peroxisome, plastid 74.5 73.77
Os05t0427400-00 Rice cytosol, peroxisome, plastid 74.79 73.74
Zm00001d017276_P001 Maize peroxisome 73.51 73.72
TraesCS1B01G048400.2 Wheat cytosol, peroxisome, plastid 73.8 73.69
TraesCS5B01G468300.1 Wheat cytosol, peroxisome, plastid 73.8 73.69
TraesCS2A01G380900.1 Wheat cytosol, peroxisome, plastid 74.36 73.63
HORVU1Hr1G022060.1 Barley cytosol, peroxisome, plastid 73.65 73.55
HORVU2Hr1G038120.1 Barley cytosol, peroxisome, plastid 73.65 73.55
TraesCS2B01G224000.1 Wheat peroxisome 73.65 73.55
TraesCS2D01G204700.1 Wheat peroxisome 73.65 73.55
TraesCS2A01G380800.1 Wheat cytosol, peroxisome, plastid 74.22 73.49
TraesCS2B01G398200.1 Wheat cytosol, peroxisome, plastid 74.22 73.49
TraesCS2D01G377400.1 Wheat cytosol, peroxisome, plastid 74.22 73.49
TraesCS1D01G103500.1 Wheat cytosol, peroxisome, plastid 73.65 73.45
Zm00001d003015_P001 Maize peroxisome 74.36 73.43
TraesCS1D01G039400.1 Wheat golgi 73.51 73.41
Os02t0626400-01 Rice mitochondrion, plasma membrane 74.65 73.4
Os02t0627100-01 Rice plasma membrane 74.08 73.35
TraesCS1B01G122800.1 Wheat cytosol, peroxisome, plastid 73.51 73.31
TraesCS1D01G039500.1 Wheat cytosol, peroxisome, plastid 74.08 73.25
TraesCS2B01G224300.1 Wheat cytosol, peroxisome, plastid 73.23 73.23
HORVU6Hr1G058840.1 Barley cytosol, peroxisome, plasma membrane 73.8 73.17
TraesCS2A01G196700.1 Wheat peroxisome 73.23 73.13
TraesCS2D01G218700.1 Wheat peroxisome 73.23 73.13
EES05455 Sorghum cytosol, peroxisome, plastid 73.94 73.11
EES07176 Sorghum cytosol, peroxisome, plastid 73.94 73.11
EES07177 Sorghum cytosol, peroxisome, plastid 73.94 73.11
TraesCS1B01G048500.1 Wheat cytosol, peroxisome, plastid 73.94 73.11
TraesCS6B01G258600.1 Wheat cytosol, peroxisome, plasma membrane 73.65 73.03
Zm00001d017279_P001 Maize cytosol, peroxisome, plastid 73.94 73.01
TraesCS1A01G037700.1 Wheat cytosol, peroxisome, plastid 73.09 72.98
TraesCS2A01G212900.1 Wheat cytosol, peroxisome, plastid 73.09 72.98
TraesCS1A01G037800.1 Wheat cytosol, peroxisome, plastid 73.8 72.97
TraesCS1B01G048200.1 Wheat cytosol, peroxisome, plastid 73.8 72.97
TraesCS4A01G401300.1 Wheat cytosol, peroxisome, plastid 73.65 72.93
TraesCS6A01G222800.1 Wheat cytosol, peroxisome, plastid 73.65 72.83
TraesCS6A01G222700.1 Wheat cytosol, peroxisome, plasma membrane 73.37 72.75
Zm00001d017275_P001 Maize extracellular 74.08 72.74
TraesCS1B01G048100.1 Wheat cytosol, peroxisome, plastid 73.51 72.69
TraesCS6B01G258500.1 Wheat extracellular, unclear 73.51 72.69
TraesCS6D01G212400.1 Wheat cytosol, peroxisome, plastid 73.51 72.69
HORVU0Hr1G016330.1 Barley cytosol, peroxisome, plastid 73.51 72.59
TraesCS6D01G212500.1 Wheat peroxisome 73.09 72.47
Zm00001d051163_P002 Maize peroxisome 73.65 72.42
Solyc03g078270.1.1 Tomato endoplasmic reticulum 14.87 72.41
TraesCS1B01G048300.1 Wheat cytosol, peroxisome, plastid 73.09 72.37
Zm00001d051166_P001 Maize extracellular 73.37 72.35
EES07175 Sorghum cytosol, peroxisome, plastid 73.51 72.28
TraesCS2A01G196400.1 Wheat mitochondrion, plastid 67.42 71.26
Os02t0626600-00 Rice plasma membrane 71.39 70.49
TraesCS2B01G020100.1 Wheat peroxisome 67.56 70.04
TraesCS3B01G027800.1 Wheat mitochondrion 53.68 69.67
Os02t0626100-01 Rice extracellular, plasma membrane 69.12 69.61
Os04t0518100-01 Rice plasma membrane 69.69 69.59
Zm00001d017274_P001 Maize plasma membrane 69.12 69.42
Zm00001d029015_P001 Maize peroxisome 39.09 69.35
TraesCS2B01G398300.2 Wheat peroxisome 36.12 69.29
Zm00001d051161_P003 Maize plastid 68.7 68.99
HORVU2Hr1G089440.9 Barley plasma membrane 74.79 68.84
EES12521 Sorghum cytosol 68.41 68.71
TraesCS6A01G222900.1 Wheat extracellular, golgi, unclear 68.41 68.61
TraesCS6B01G258400.2 Wheat cytosol, peroxisome, plastid 68.41 68.61
TraesCS6D01G212200.1 Wheat extracellular, golgi, unclear 68.41 68.61
EES07174 Sorghum cytosol, peroxisome, plastid 68.13 68.32
PGSC0003DMT400055529 Potato cytosol 16.01 67.66
HORVU2Hr1G038140.1 Barley mitochondrion, plastid 68.84 67.22
Zm00001d033286_P001 Maize peroxisome 66.43 67.19
TraesCS2A01G212600.1 Wheat cytosol 25.07 66.79
TraesCS3A01G029200.1 Wheat peroxisome 65.01 66.62
TraesCS3B01G053900.1 Wheat peroxisome 65.01 66.62
TraesCS3D01G016300.1 Wheat peroxisome 65.01 66.62
HORVU3Hr1G005330.2 Barley cytosol, peroxisome, plasma membrane 64.73 66.23
Os12t0520200-01 Rice plasma membrane 63.46 65.88
TraesCSU01G030700.1 Wheat peroxisome 62.61 65.1
Zm00001d027249_P001 Maize peroxisome 20.54 65.02
EER93773 Sorghum peroxisome 65.3 65.02
TraesCS3D01G016500.1 Wheat peroxisome 63.03 64.59
Bra028793.1-P Field mustard peroxisome 26.49 63.61
Zm00001d020933_P001 Maize mitochondrion 18.7 62.56
HORVU6Hr1G058820.2 Barley mitochondrion 62.61 62.34
Solyc03g071870.1.1 Tomato peroxisome 15.01 61.63
Zm00001d003016_P001 Maize plastid 68.56 61.34
Zm00001d053619_P001 Maize mitochondrion 34.7 57.92
Solyc10g011930.1.1 Tomato cytosol 10.34 57.48
VIT_11s0016g01640.t01 Wine grape peroxisome 54.11 57.44
Zm00001d051164_P001 Maize peroxisome 12.61 56.69
Solyc10g011920.1.1 Tomato cytosol 10.06 55.91
GSMUA_Achr9P15990_001 Banana peroxisome 55.52 55.76
HORVU2Hr1G062750.1 Barley mitochondrion 14.16 54.35
VIT_11s0016g01660.t01 Wine grape peroxisome 12.32 50.0
VIT_11s0016g01520.t01 Wine grape peroxisome 61.61 48.6
Os12t0461300-00 Rice plastid 16.43 45.85
Os08t0308300-00 Rice plastid 9.35 35.11
VIT_11s0016g01510.t01 Wine grape peroxisome 12.61 25.07
Protein Annotations
KEGG:00360+4.3.1.24KEGG:00940+4.3.1.24Gene3D:1.10.274.20Gene3D:1.10.275.10Gene3D:1.20.200.10MapMan:9.2.1.1.1
InterPro:Aromatic_LyaseEnsemblPlantsGene:Bra029831EnsemblPlants:Bra029831.1EnsemblPlants:Bra029831.1-PInterPro:Fumarase/histidase_NGO:GO:0003674
GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006559
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009698GO:GO:0009800
GO:GO:0009987GO:GO:0016829GO:GO:0016841GO:GO:0019748GO:GO:0045548InterPro:IPR023144
InterPro:IPR024083InterPro:L-Aspartase-likeUniProt:M4EM11PFAM:PF00221ScanProsite:PS00488PANTHER:PTHR10362
PANTHER:PTHR10362:SF30InterPro:Phe/His_NH3-lyase_ASInterPro:Phe_NH3-lyaseInterPro:Phe_NH3-lyase_shielding_dom_sfSUPFAM:SSF48557TIGRFAMs:TIGR01226
UniParc:UPI000254795ASEG:seg::::
Description
AT3G10340 (E=0.0) PAL4 | PAL4 (Phenylalanine ammonia-lyase 4); ammonia ligase/ ammonia-lyase/ catalytic
Coordinates
chrA05:-:22086583..22093246
Molecular Weight (calculated)
76885.1 Da
IEP (calculated)
5.872
GRAVY (calculated)
-0.139
Length
706 amino acids
Sequence
(BLAST)
001: MDLCKQNNNH IVAVSADPLN WNAAAEALKG SHLEEVKRMV EDYRKGAVRL GGETLTIGQV AAVASGGVTV ELAEEARAGV KASSDWVMES MNRGTDSYGV
101: TTGFGATSHR RTKQGGALQK ELIRFLNAGI FGAGVGDTSL TLPKSATRAA MLVRVNTLLQ GYSGIRFEIL EAITKLLNNE ITPCIPLRGS ITASGDLVPL
201: SYIAGLLTGR PNSKAVGPAG ETLTASDAFK LAGVPSFFEL QPKEGLALVN GTGVGSGLAS MVLFETNVLA VLSEVMSAMF AEVMQGKPEF TDHLTHKLKH
301: HPGQIEAAAI MEHILHGSSY VKEAQQLHEL DPLQKPKQDR YALRTSPQWL GPQIEVIRAA TKMIEREINS VNDNPLIDVS RNKALHGGNF QGTPIGVAMD
401: NTRLAIASIG KLMFAQFSEL VNDFYNNGLP SNLSGGRNPS LDYGFKGAEI AMASYCSELQ FLANPVTNHV QSAEQHNQDV NSLGLISSRK TEEAVDILKL
501: MSTTYLVALC QAVDLRHIEE NLKKAVKAAV SQVAKRVLTV GVNGELHPSR FTERDVLQVV DREYVFSYAD DPCSFAYPLM QRLRHVLVDH ALEDPEREAN
601: AATSVFQKIG AFETELKVVL PKEVERVRSE YEEGCSVMGN RIKECRSYPL YRFVREELET ELLSGESVRS PGEEFDKVFS AICDGKVIDP LLECLKEWNG
701: APVPIC
Best Arabidopsis Sequence Match ( AT3G10340.1 )
(BLAST)
001: MELCNQNNHI TAVSGDPLNW NATAEALKGS HLDEVKRMVK EYRKEAVKLG GETLTIGQVA AVARGGGGST VELAEEARAG VKASSEWVME SMNRGTDSYG
101: VTTGFGATSH RRTKQGGALQ NELIRFLNAG IFGPGAGDTS HTLPKPTTRA AMLVRVNTLL QGYSGIRFEI LEAITKLLNH EITPCLPLRG TITASGDLVP
201: LSYIAGLLTG RPNSKAVGPS GETLTASEAF KLAGVSSFFE LQPKEGLALV NGTAVGSGLA STVLFDANIL AVLSEVMSAM FAEVMQGKPE FTDHLTHKLK
301: HHPGQIEAAA IMEHILDGSS YVKEAQLLHE MDPLQKPKQD RYALRTSPQW LGPQIEVIRA ATKMIEREIN SVNDNPLIDV SRNKALHGGN FQGTPIGVAM
401: DNSRLAIASI GKLMFAQFSE LVNDFYNNGL PSNLSGGRNP SLDYGFKGAE IAMASYCSEL QFLANPVTNH VQSAEQHNQD VNSLGLISSR KTAEAVDILK
501: LMSTTYLVAL CQAVDLRHLE ENLKKAVKSA VSQVAKRVLT VGANGELHPS RFTERDVLQV VDREYVFSYA DDPCSLTYPL MQKLRHILVD HALADPEREA
601: NSATSVFHKI GAFEAELKLL LPKEVERVRV EYEEGTSAIA NRIKECRSYP LYRFVRDELN TELLTGENVR SPGEEFDKVF LAISDGKLID PLLECLKEWN
701: GAPVSIC
Arabidopsis Description
PAL4Phenylalanine ammonia-lyase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS45]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.