Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G039500.1 | Wheat | cytosol, peroxisome, plastid | 98.32 | 98.32 |
| TraesCS1B01G048500.1 | Wheat | cytosol, peroxisome, plastid | 97.9 | 97.9 |
| TraesCS2A01G381100.1 | Wheat | plastid | 94.96 | 95.09 |
| TraesCS2A01G381000.1 | Wheat | plastid | 94.96 | 95.09 |
| TraesCS2A01G380800.1 | Wheat | cytosol, peroxisome, plastid | 94.68 | 94.81 |
| TraesCS2A01G380900.1 | Wheat | cytosol, peroxisome, plastid | 94.54 | 94.67 |
| TraesCS4A01G401300.1 | Wheat | cytosol, peroxisome, plastid | 94.26 | 94.39 |
| TraesCS1A01G037700.1 | Wheat | cytosol, peroxisome, plastid | 93.28 | 94.2 |
| TraesCS1A01G094900.1 | Wheat | cytosol, peroxisome, plastid | 65.41 | 93.78 |
| TraesCS2A01G212900.1 | Wheat | cytosol, peroxisome, plastid | 90.48 | 91.37 |
| TraesCS2A01G196700.1 | Wheat | peroxisome | 90.2 | 91.09 |
| Os04t0518400-01 | Rice | extracellular, plasma membrane | 90.2 | 90.2 |
| TraesCS2A01G196400.1 | Wheat | mitochondrion, plastid | 81.93 | 87.57 |
| OQU81984 | Sorghum | peroxisome | 87.53 | 87.53 |
| Zm00001d003015_P001 | Maize | peroxisome | 86.69 | 86.57 |
| TraesCS6A01G222700.1 | Wheat | cytosol, peroxisome, plasma membrane | 85.71 | 85.96 |
| TraesCS6A01G222800.1 | Wheat | cytosol, peroxisome, plastid | 84.87 | 84.87 |
| TraesCS2A01G212600.1 | Wheat | cytosol | 31.23 | 84.15 |
| CDY18464 | Canola | peroxisome | 46.22 | 78.01 |
| CDX67566 | Canola | cytosol | 52.94 | 76.99 |
| CDX73567 | Canola | cytosol | 53.22 | 76.61 |
| CDX78161 | Canola | cytosol | 53.22 | 76.61 |
| CDY66761 | Canola | cytosol, peroxisome, plastid | 54.62 | 75.14 |
| Bra003126.1-P | Field mustard | cytosol | 74.23 | 74.96 |
| AT3G10340.1 | Thale cress | peroxisome | 73.67 | 74.4 |
| CDX76219 | Canola | cytosol | 54.34 | 74.33 |
| Bra017210.1-P | Field mustard | cytosol, peroxisome, plastid | 74.93 | 74.1 |
| CDY00922 | Canola | cytosol | 72.97 | 73.8 |
| Bra029831.1-P | Field mustard | cytosol | 72.97 | 73.8 |
| AT3G53260.1 | Thale cress | cytosol | 74.09 | 73.78 |
| CDY08611 | Canola | cytosol | 72.83 | 73.65 |
| Bra006985.1-P | Field mustard | cytosol | 72.55 | 73.37 |
| TraesCS6A01G222900.1 | Wheat | extracellular, golgi, unclear | 72.13 | 73.15 |
| AT2G37040.1 | Thale cress | cytosol, peroxisome, plastid | 74.09 | 72.97 |
| Bra039777.1-P | Field mustard | peroxisome | 51.26 | 71.76 |
| CDX99621 | Canola | mitochondrion | 53.22 | 69.47 |
| AT5G04230.2 | Thale cress | peroxisome | 67.23 | 68.77 |
| TraesCS3A01G029200.1 | Wheat | peroxisome | 66.25 | 68.65 |
| CDY15917 | Canola | cytosol, peroxisome, plastid | 64.85 | 66.33 |
| Bra030322.1-P | Field mustard | cytosol, peroxisome, plastid | 64.57 | 66.05 |
| CDY13306 | Canola | peroxisome | 19.33 | 65.71 |
| Bra005221.1-P | Field mustard | peroxisome | 34.03 | 65.5 |
| CDY18463 | Canola | peroxisome | 23.53 | 63.88 |
| CDX74991 | Canola | peroxisome | 33.89 | 63.68 |
| CDX91331 | Canola | peroxisome | 33.89 | 63.68 |
| VIT_11s0016g01640.t01 | Wine grape | peroxisome | 53.36 | 57.29 |
| GSMUA_Achr9P15990_001 | Banana | peroxisome | 54.9 | 55.76 |
| CDY61769 | Canola | peroxisome | 18.77 | 52.96 |
| Bra028793.1-P | Field mustard | peroxisome | 21.43 | 52.04 |
| VIT_11s0016g01520.t01 | Wine grape | peroxisome | 61.34 | 48.94 |
| VIT_11s0016g01660.t01 | Wine grape | peroxisome | 11.62 | 47.7 |
| TraesCS5A01G558600.1 | Wheat | mitochondrion | 17.09 | 29.12 |
| VIT_11s0016g01510.t01 | Wine grape | peroxisome | 13.73 | 27.61 |
Protein Annotations
| KEGG:00360+4.3.1.24 | KEGG:00940+4.3.1.24 | Gene3D:1.10.274.20 | Gene3D:1.10.275.10 | Gene3D:1.20.200.10 | MapMan:9.2.1.1.1 |
| InterPro:Aromatic_Lyase | InterPro:Fumarase/histidase_N | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006559 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016841 | InterPro:IPR023144 | InterPro:IPR024083 | InterPro:L-Aspartase-like | PFAM:PF00221 |
| ScanProsite:PS00488 | PANTHER:PTHR10362 | PANTHER:PTHR10362:SF9 | InterPro:Phe/His_NH3-lyase_AS | InterPro:Phe_NH3-lyase | InterPro:Phe_NH3-lyase_shielding_dom_sf |
| SUPFAM:SSF48557 | TIGRFAMs:TIGR01226 | EnsemblPlantsGene:TraesCS1A01G037800 | EnsemblPlants:TraesCS1A01G037800.1 | TIGR:cd00332 | : |
Description
No Description!
Coordinates
chr1A:+:20935410..20937908
Molecular Weight (calculated)
77232.6 Da
IEP (calculated)
6.351
GRAVY (calculated)
-0.131
Length
714 amino acids
Sequence
(BLAST)
(BLAST)
001: MECDNRAHVA ANGDGLCVAQ LARADPLNWG KAAEELSGSH LDAVKRMVEE YRRPVVTMEG ASLTIAMVAA VAAGSDTRVE LDESARGRVK ESSDWVMNSM
101: ANGTDSYGVT TGFGATSHRR TKEGGALQRE LIRFLNAGAF GTGGHNHVLP AATTRAAMLV RVNTLLQGYS GIRFEILETI AKLLNTNVTP CLPLRGTITA
201: SGDLVPLSYI AGLVTGRANS VATAPDGSKV NAAEAFKIAG IQHGFFELQP KEGLAMVNGT AVGSGLASMV LFEANILGVL AEVLSAVFCE VMNGKPEYTD
301: HLTHKLKHHP GQIEAAAIME HILEGSSYMA LAKKLGELDP LMKPKQDRYA LRTSPQWLGP QIEVIRAATK SIEREINSVN DNPLIDVSRG KAIHGGNFQG
401: TPIGVSMDNT RLAIAAIGKL MFAQFSELVN DFYNNGLPSN LSGGRNPSLD YGLKGAEIAM ASYCSELQFL GNPVTNHVQS AEQHNQDVNS LGLMSARKTA
501: ESIDILKLMS STFLVALCQA IDLRHLEENV KDAVKSCVKT VARKTLSTNN NGHLHNARFC EKDLLLTIDR EAVFTYADDP CSANYPLMQK MRAVLVEHAL
601: ANGDAEHDVE TSVFAKLAMF EQELRVVLPK EVEAARSAVE NGIAAQQNRI TGCRSYPLYR FVRNELGTEY LTGEKTRSPG EEVDKVFIAM NQGKHIDALL
701: ECLKEWNGEP LPIC
101: ANGTDSYGVT TGFGATSHRR TKEGGALQRE LIRFLNAGAF GTGGHNHVLP AATTRAAMLV RVNTLLQGYS GIRFEILETI AKLLNTNVTP CLPLRGTITA
201: SGDLVPLSYI AGLVTGRANS VATAPDGSKV NAAEAFKIAG IQHGFFELQP KEGLAMVNGT AVGSGLASMV LFEANILGVL AEVLSAVFCE VMNGKPEYTD
301: HLTHKLKHHP GQIEAAAIME HILEGSSYMA LAKKLGELDP LMKPKQDRYA LRTSPQWLGP QIEVIRAATK SIEREINSVN DNPLIDVSRG KAIHGGNFQG
401: TPIGVSMDNT RLAIAAIGKL MFAQFSELVN DFYNNGLPSN LSGGRNPSLD YGLKGAEIAM ASYCSELQFL GNPVTNHVQS AEQHNQDVNS LGLMSARKTA
501: ESIDILKLMS STFLVALCQA IDLRHLEENV KDAVKSCVKT VARKTLSTNN NGHLHNARFC EKDLLLTIDR EAVFTYADDP CSANYPLMQK MRAVLVEHAL
601: ANGDAEHDVE TSVFAKLAMF EQELRVVLPK EVEAARSAVE NGIAAQQNRI TGCRSYPLYR FVRNELGTEY LTGEKTRSPG EEVDKVFIAM NQGKHIDALL
701: ECLKEWNGEP LPIC
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
Arabidopsis Description
PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.