Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G257400.1 | Wheat | cytosol | 96.36 | 96.36 |
| Os06t0594400-02 | Rice | cytosol | 78.7 | 79.53 |
| EER88591 | Sorghum | cytosol | 76.1 | 76.1 |
| Zm00001d036925_P001 | Maize | cytosol | 74.81 | 75.2 |
| TraesCS6D01G165600.1 | Wheat | cytosol | 61.3 | 66.48 |
| VIT_09s0002g08870.t01 | Wine grape | cytosol | 15.58 | 52.63 |
| GSMUA_Achr5P06210_001 | Banana | cytosol | 45.71 | 50.43 |
| GSMUA_Achr5P24900_001 | Banana | cytosol | 44.16 | 49.42 |
| VIT_09s0002g05080.t01 | Wine grape | cytosol | 43.64 | 47.32 |
| VIT_09s0002g05010.t01 | Wine grape | cytosol, peroxisome, plastid | 37.4 | 47.21 |
| GSMUA_Achr10P... | Banana | cytosol | 42.08 | 44.14 |
| KRH23494 | Soybean | cytosol | 40.78 | 43.85 |
| KRH47516 | Soybean | cytosol | 40.0 | 43.5 |
| KRH44388 | Soybean | cytosol | 39.74 | 43.34 |
| PGSC0003DMT400006584 | Potato | cytosol | 38.96 | 42.25 |
| Solyc03g120320.1.1 | Tomato | cytosol | 38.7 | 41.97 |
| VIT_09s0002g08880.t01 | Wine grape | cytosol | 33.25 | 41.56 |
| GSMUA_Achr10P... | Banana | cytosol | 38.44 | 41.46 |
| GSMUA_Achr10P... | Banana | cytosol | 38.18 | 41.29 |
| VIT_09s0002g04930.t01 | Wine grape | cytosol | 16.36 | 40.91 |
| VIT_09s0002g08860.t01 | Wine grape | cytosol | 36.62 | 40.52 |
| CDY36579 | Canola | cytosol | 37.66 | 40.5 |
| Bra026116.1-P | Field mustard | cytosol | 37.66 | 40.5 |
| CDY58028 | Canola | cytosol | 37.4 | 40.22 |
| Solyc03g120330.1.1 | Tomato | cytosol | 37.66 | 40.17 |
| KRH09825 | Soybean | cytosol | 39.74 | 39.95 |
| GSMUA_Achr10P... | Banana | cytosol | 36.88 | 39.89 |
| PGSC0003DMT400006583 | Potato | cytosol | 37.14 | 39.72 |
| CDY69686 | Canola | cytosol | 36.62 | 39.5 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 28.83 | 39.36 |
| Solyc06g066770.1.1 | Tomato | cytosol | 37.4 | 39.24 |
| AT1G80440.1 | Thale cress | cytosol | 35.84 | 38.98 |
| PGSC0003DMT400042651 | Potato | cytosol | 36.62 | 38.95 |
| Bra026753.1-P | Field mustard | cytosol | 36.1 | 38.83 |
| CDY53309 | Canola | cytosol | 36.1 | 38.83 |
| AT1G15670.1 | Thale cress | cytosol | 35.84 | 38.44 |
| PGSC0003DMT400042652 | Potato | cytosol | 36.1 | 38.4 |
| Bra035183.1-P | Field mustard | cytosol | 34.81 | 37.33 |
| CDY39979 | Canola | cytosol | 34.81 | 37.33 |
| VIT_09s0002g05210.t01 | Wine grape | cytosol | 12.99 | 37.31 |
| CDX87309 | Canola | cytosol | 34.29 | 36.77 |
| PGSC0003DMT400042650 | Potato | cytosol | 35.84 | 36.51 |
| TraesCS4D01G084900.1 | Wheat | cytosol | 30.91 | 32.16 |
| TraesCS4D01G085000.1 | Wheat | plastid | 30.65 | 28.99 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G352400.1 | EnsemblPlantsGene:TraesCS7D01G352400 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 |
| PANTHER:PTHR24413:SF165 | PFAM:PF00646 | PFAM:PF01344 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 |
| MapMan:9.2.1.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:454071067..454072493
Molecular Weight (calculated)
40724.1 Da
IEP (calculated)
4.913
GRAVY (calculated)
-0.138
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSCFAASAM SDLIPGLPEE VARECLIRVG FDQLPAVRRI SRQWKEEVES PDYGRLRRAE GLARPVLAMV QAQPERVEPG PAQKHASASA ANGGPANNYR
101: MVLLDPLEGR WAPLPVLPGP TGSLPLFCQV AAVDGAQGRK RLVVVGGWDP ESWAPTDSVY VYDFLTGAWR RGALMPGPRR SFFATAAVGG AVYVAGGHDE
201: EKNALRSALA YDPDADAWAA LPDMAEERDE PRGLCVGGRF LVVGGYPTQA QGRFAGSAEA FDPATAAWAT VQESLLEDGA CPRTCCVAPG AERMYMLRDG
301: NLVARDGGAS AGWRTVASVP EDARTASTVS AIPSGRVVVI GSGCHGGDQT VYMLRDEAGQ AASWARAPAP PEFSGHVQAA CFLEI
101: MVLLDPLEGR WAPLPVLPGP TGSLPLFCQV AAVDGAQGRK RLVVVGGWDP ESWAPTDSVY VYDFLTGAWR RGALMPGPRR SFFATAAVGG AVYVAGGHDE
201: EKNALRSALA YDPDADAWAA LPDMAEERDE PRGLCVGGRF LVVGGYPTQA QGRFAGSAEA FDPATAAWAT VQESLLEDGA CPRTCCVAPG AERMYMLRDG
301: NLVARDGGAS AGWRTVASVP EDARTASTVS AIPSGRVVVI GSGCHGGDQT VYMLRDEAGQ AASWARAPAP PEFSGHVQAA CFLEI
001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
Arabidopsis Description
F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.