Factsheet for GSMUA_Achr10P23810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	89.61	89.61
GSMUA_Achr10P...	Banana	cytosol	73.31	73.11
GSMUA_Achr10P...	Banana	cytosol	69.66	67.57
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	52.81	66.67
GSMUA_Achr5P06210_001	Banana	cytosol	48.03	49.0
GSMUA_Achr5P24900_001	Banana	cytosol	46.35	47.97
GSMUA_AchrUn_...	Banana	mitochondrion	9.55	45.95
TraesCS6D01G165600.1	Wheat	cytosol	38.48	38.59
Os02t0208700-00	Rice	cytosol	32.87	38.11
EES06499	Sorghum	cytosol	39.61	37.8
Zm00001d036925_P001	Maize	cytosol	40.45	37.6
TraesCS7B01G257400.1	Wheat	cytosol	39.89	36.88
TraesCS7D01G352400.1	Wheat	cytosol	39.89	36.88
TraesCS6A01G178900.1	Wheat	cytosol	38.48	36.83
TraesCS6B01G206300.1	Wheat	cytosol	38.2	36.56
Os06t0594400-02	Rice	cytosol	38.76	36.22
EER88591	Sorghum	cytosol	39.04	36.1
GSMUA_Achr6P06940_001	Banana	cytosol	26.97	25.95
GSMUA_Achr6P28790_001	Banana	cytosol	11.52	24.85

Protein Annotations

EnsemblPlants:GSMUA_Achr10P23810_001	EnsemblPlants:GSMUA_Achr10T23810_001	EnsemblPlantsGene:GSMUA_Achr10G23810_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413
PANTHER:PTHR24413:SF93	PFAM:PF01344	SEG:seg	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI000296C52A	UniProt:M0RKV6	MapMan:35.1	:	:	:

Description

Putative F-box/kelch-repeat protein At1g15670 [Source:GMGC_GENE;Acc:GSMUA_Achr10G23810_001]

Coordinates

chr10:-:28367529..28368599

Molecular Weight (calculated)

39374.4 Da

IEP (calculated)

7.623

GRAVY (calculated)

-0.094

Length

356 amino acids

Sequence
(BLAST)

001: MEDLIPGLTD DVARECLARV PFNAFPTLFS VCKLWRQELR DPRFHRLRKS TGNVQPVVVL VQSVSDFSRY TRPRPLPYRL VIFEPATGVW SSLPPCPGLP
101: HGLPISCRLA ATGTELVIIG GWKPPERATT DEVHVYDFVS GQWRRGSPVP SPLRSYFACA ATHDFDEGCR TVYIAGGDDE RKNALRSALA YDVAGDSWKP
201: LPDMARERIG CHGVTLRGKF LVLSWLGAEA FDAAAGSWGP VEEAAGEEYY NCNTYVATED GRMYRCLGRE VMVQLEGGVW AKVAELPGEM RRARYTVAWE
301: GKLMVMGLGH DFGFLASILD MKATTTRTTM AAATWKKVEV APGYRGFVLG ACCLVI

Best Arabidopsis Sequence Match ( AT1G15670.1 )
(BLAST)

001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI

Arabidopsis Description

F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.