CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93773
EES05455
EES07174
EES07175
EES07176
EES07177
EES12521
OQU81984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	EER93773	AT2G37040.1	21798944
AT1G15670.1	EES05455	AT2G37040.1	21798944
AT1G15670.1	EES07174	AT2G37040.1	21798944
AT1G15670.1	EES07175	AT2G37040.1	21798944
AT1G15670.1	EES07176	AT2G37040.1	21798944
AT1G15670.1	EES07177	AT2G37040.1	21798944
AT1G15670.1	EES12521	AT2G37040.1	21798944
AT1G15670.1	OQU81984	AT2G37040.1	21798944
AT1G15670.1	EER93773	AT3G53260.1	21798944
AT1G15670.1	EES05455	AT3G53260.1	21798944
AT1G15670.1	EES07174	AT3G53260.1	21798944
AT1G15670.1	EES07175	AT3G53260.1	21798944
AT1G15670.1	EES07176	AT3G53260.1	21798944
AT1G15670.1	EES07177	AT3G53260.1	21798944
AT1G15670.1	EES12521	AT3G53260.1	21798944
AT1G15670.1	OQU81984	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0208700-00	Rice	cytosol	55.5	67.43
TraesCS6B01G206300.1	Wheat	cytosol	65.42	65.59
TraesCS6A01G178900.1	Wheat	cytosol	64.88	65.05
TraesCS6D01G165600.1	Wheat	cytosol	61.66	64.79
EER88591	Sorghum	cytosol	61.66	59.74
VIT_09s0002g08870.t01	Wine grape	cytosol	15.82	51.75
GSMUA_Achr5P06210_001	Banana	cytosol	46.38	49.57
GSMUA_Achr5P24900_001	Banana	cytosol	43.43	47.09
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	38.07	46.56
VIT_09s0002g05080.t01	Wine grape	cytosol	43.43	45.63
GSMUA_Achr10P...	Banana	cytosol	42.9	43.6
KRH47516	Soybean	cytosol	41.29	43.5
KRH23494	Soybean	cytosol	40.75	42.46
KRH44388	Soybean	cytosol	39.95	42.21
VIT_09s0002g08880.t01	Wine grape	cytosol	34.85	42.21
GSMUA_Achr10P...	Banana	cytosol	39.95	41.85
PGSC0003DMT400006584	Potato	cytosol	39.68	41.69
Solyc03g120320.1.1	Tomato	cytosol	39.14	41.13
VIT_09s0002g08860.t01	Wine grape	cytosol	38.34	41.09
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	30.83	40.78
GSMUA_Achr10P...	Banana	cytosol	38.87	40.62
VIT_09s0002g04930.t01	Wine grape	cytosol	16.62	40.26
GSMUA_Achr10P...	Banana	cytosol	37.8	39.61
AT1G80440.1	Thale cress	cytosol	36.73	38.7
KRH09825	Soybean	cytosol	39.68	38.64
Solyc03g120330.1.1	Tomato	cytosol	36.46	37.67
CDY58028	Canola	cytosol	35.92	37.43
Bra026116.1-P	Field mustard	cytosol	35.92	37.43
CDY36579	Canola	cytosol	35.92	37.43
PGSC0003DMT400006583	Potato	cytosol	35.92	37.22
CDY39979	Canola	cytosol	35.66	37.05
PGSC0003DMT400042651	Potato	cytosol	35.66	36.74
PGSC0003DMT400042652	Potato	cytosol	35.66	36.74
VIT_09s0002g05210.t01	Wine grape	cytosol	13.14	36.57
Solyc06g066770.1.1	Tomato	cytosol	35.92	36.51
Bra035183.1-P	Field mustard	cytosol	34.85	36.21
CDX87309	Canola	cytosol	34.58	35.93
CDY69686	Canola	cytosol	34.32	35.85
CDY53309	Canola	cytosol	34.32	35.75
Bra026753.1-P	Field mustard	cytosol	34.32	35.75
AT1G15670.1	Thale cress	cytosol	33.78	35.1
PGSC0003DMT400042650	Potato	cytosol	35.39	34.92
EES08254	Sorghum	cytosol	33.78	32.98
EES09544	Sorghum	cytosol	33.51	32.64
OQU85159	Sorghum	cytosol	32.98	32.03

Protein Annotations

Gene3D:2.120.10.80	EntrezGene:8071669	MapMan:9.2.1.1.2	UniProt:C5XXZ5	EnsemblPlants:EES06499	ProteinID:EES06499
ProteinID:EES06499.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162
GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24413	PANTHER:PTHR24413:SF144	SMART:SM00612
EnsemblPlantsGene:SORBI_3004G088300	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0001A85CD0	RefSeq:XP_002453523.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:7466887..7468008

Molecular Weight (calculated)

39390.9 Da

IEP (calculated)

7.720

GRAVY (calculated)

-0.077

Length

373 amino acids

Sequence
(BLAST)

001: MADLIPGLPE DMARECLLRV GFQHLPTARR VSRGWKAELE SPSHHRSRRR HALLALAQAR PPLAGSGPAR KYAASGAGYS FRLVLHDPAA AAGDGGSWAP
101: LPAPAHAPLA RLPLFCQLAA VGEGGPAAKL LVLGGWDPET WAPTASVHVY DFLSGAWRRG ADMPPPRRSF FACAAVGGKV FVAGGHDEEK NALRSAAAYD
201: VEADAWTPLP DMARERDEPR GVCVGGRFVV VGGYPTVAQG RFAGSVEAFD PATSSWGPVQ ERVIEDGACP RTCWAAPDAA AAGSRMYMYM LRDGCVVARD
301: AEGGGRWRTL ACLPEDARGA TTVAAIGDGR VVVLGAEQTV YVLSHNQATP SWTRVAAPLE FAGHVQAACC VQI

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.