Factsheet for PGSC0003DMT400006583

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400049886
PGSC0003DMT400055488
PGSC0003DMT400055489
PGSC0003DMT400055529
PGSC0003DMT400055531
PGSC0003DMT400080548
PGSC0003DMT400080765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	PGSC0003DMT400049886	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400055488	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400055489	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400055529	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400055531	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400080548	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400080765	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400049886	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400055488	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400055489	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400055529	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400055531	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400080548	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400080765	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120330.1.1	Tomato	cytosol	90.56	90.3
PGSC0003DMT400042652	Potato	cytosol	66.67	66.3
PGSC0003DMT400042651	Potato	cytosol	66.67	66.3
PGSC0003DMT400042650	Potato	cytosol	66.39	63.23
PGSC0003DMT400006584	Potato	cytosol	50.83	51.55
GSMUA_AchrUn_...	Banana	mitochondrion	10.0	48.65
KRH23494	Soybean	cytosol	47.78	48.04
KRH47516	Soybean	cytosol	46.67	47.46
Bra026753.1-P	Field mustard	cytosol	45.83	46.09
CDY53309	Canola	cytosol	45.83	46.09
KRH44388	Soybean	cytosol	45.0	45.89
Bra026116.1-P	Field mustard	cytosol	45.56	45.81
CDY36579	Canola	cytosol	45.56	45.81
CDY58028	Canola	cytosol	45.56	45.81
AT1G80440.1	Thale cress	cytosol	45.0	45.76
CDY69686	Canola	cytosol	45.28	45.66
CDY39979	Canola	cytosol	45.0	45.13
CDX87309	Canola	cytosol	44.72	44.85
Bra035183.1-P	Field mustard	cytosol	44.72	44.85
AT1G15670.1	Thale cress	cytosol	43.89	44.01
KRH09825	Soybean	cytosol	44.17	41.51
Os06t0594400-02	Rice	cytosol	40.0	37.8
TraesCS7B01G257400.1	Wheat	cytosol	40.28	37.66
Os02t0208700-00	Rice	cytosol	31.94	37.46
TraesCS7D01G352400.1	Wheat	cytosol	39.72	37.14
TraesCS6A01G178900.1	Wheat	cytosol	38.33	37.1
EER88591	Sorghum	cytosol	39.44	36.88
Zm00001d036925_P001	Maize	cytosol	39.17	36.81
TraesCS6B01G206300.1	Wheat	cytosol	37.78	36.56
EES06499	Sorghum	cytosol	37.22	35.92
TraesCS6D01G165600.1	Wheat	cytosol	35.28	35.77
PGSC0003DMT400060940	Potato	cytosol	31.39	32.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400006583	EnsemblPlantsGene:PGSC0003DMG400002561	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24413	PANTHER:PTHR24413:SF93	PFAM:PF00646	PFAM:PF01344	PGSC:PGSC0003DMG400002561	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002964FDD	UniProt:M0ZRM9	MapMan:9.2.1.1.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002561]

Coordinates

chr3:-:59761482..59763077

Molecular Weight (calculated)

40527.2 Da

IEP (calculated)

5.610

GRAVY (calculated)

-0.248

Length

360 amino acids

Sequence
(BLAST)

001: MDLLPGLPND IALECLIRLP LHQFSKAASV CTSWKTEIKH PLFRQRRKES GLTRPVFVLA QAMVTTIRKP YGITSLSSTQ FYRLTLYDPE RGCWYDLPPI
101: PELIDGLPMF CRVVGVGSDV MVIGGCDPVN WRVMDSVFIY NFVSGSWRRG TDMPGGQRLF FGCASDSERF VVVAGGHNDE KNALRSALLY DVAEDEWITL
201: PEMATERDEC KCAFHRGEFH VIGGYPTHAQ GQFHRSAEVF NSDTSRQWRL EEDFLGADTC PQTCIEGDDG RLYMCRDGDV VVKINATWKH VARLPGGVSN
301: GAYLTAWQGK LLAVGNSILD EIHSSYELDV NSESKEKTWR KLDAPNEYCG HVQSVCWLEI

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.