CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91925
KRH34854

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	KRG91925	AT2G37040.1	21798944
AT1G15670.1	KRH34854	AT2G37040.1	21798944
AT1G15670.1	KRG91925	AT3G53260.1	21798944
AT1G15670.1	KRH34854	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47516	Soybean	cytosol	90.65	90.4
KRH23494	Soybean	cytosol	62.32	61.45
VIT_09s0002g08870.t01	Wine grape	cytosol	18.41	57.02
VIT_09s0002g05080.t01	Wine grape	cytosol	54.67	54.37
KRH09825	Soybean	cytosol	57.51	53.0
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	45.61	52.79
GSMUA_AchrUn_...	Banana	mitochondrion	10.76	51.35
Solyc03g120320.1.1	Tomato	cytosol	50.99	50.7
PGSC0003DMT400006584	Potato	cytosol	50.99	50.7
VIT_09s0002g04930.t01	Wine grape	cytosol	22.1	50.65
CDY58028	Canola	cytosol	50.14	49.44
CDY36579	Canola	cytosol	49.86	49.16
Bra026116.1-P	Field mustard	cytosol	49.86	49.16
VIT_09s0002g08860.t01	Wine grape	cytosol	47.88	48.56
AT1G80440.1	Thale cress	cytosol	48.44	48.31
AT1G15670.1	Thale cress	cytosol	48.73	47.91
VIT_09s0002g05210.t01	Wine grape	cytosol	18.13	47.76
CDY69686	Canola	cytosol	47.59	47.06
PGSC0003DMT400042651	Potato	cytosol	48.16	46.96
CDY53309	Canola	cytosol	47.59	46.93
Bra026753.1-P	Field mustard	cytosol	47.59	46.93
PGSC0003DMT400042652	Potato	cytosol	47.59	46.41
Solyc03g120330.1.1	Tomato	cytosol	47.03	45.98
Bra035183.1-P	Field mustard	cytosol	46.74	45.96
VIT_09s0002g08880.t01	Wine grape	cytosol	39.94	45.78
CDX87309	Canola	cytosol	46.18	45.4
Os02t0208700-00	Rice	cytosol	39.38	45.28
Solyc06g066770.1.1	Tomato	cytosol	47.03	45.23
CDY39979	Canola	cytosol	45.89	45.13
PGSC0003DMT400006583	Potato	cytosol	45.89	45.0
PGSC0003DMT400042650	Potato	cytosol	47.31	44.18
EER88591	Sorghum	cytosol	44.48	40.78
Zm00001d036925_P001	Maize	cytosol	43.91	40.47
Os06t0594400-02	Rice	cytosol	43.63	40.42
EES06499	Sorghum	cytosol	42.21	39.95
TraesCS7D01G352400.1	Wheat	cytosol	43.34	39.74
TraesCS7B01G257400.1	Wheat	cytosol	43.06	39.48
TraesCS6B01G206300.1	Wheat	cytosol	40.23	38.17
TraesCS6A01G178900.1	Wheat	cytosol	40.23	38.17
TraesCS6D01G165600.1	Wheat	cytosol	37.11	36.9
KRH58914	Soybean	extracellular, plasma membrane	37.39	34.29

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.2	EMBL:ACUP02004927	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_08G207700
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161
UniProt:I1KV96	InterPro:IPR001810	InterPro:IPR015915	EnsemblPlants:KRH44388	ProteinID:KRH44388	ProteinID:KRH44388.1
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PFAM:PF13964	PANTHER:PTHR24413
PANTHER:PTHR24413:SF93	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002338E06	:

Description

hypothetical protein

Coordinates

chr8:-:16772477..16774228

Molecular Weight (calculated)

38918.0 Da

IEP (calculated)

5.681

GRAVY (calculated)

-0.228

Length

353 amino acids

Sequence
(BLAST)

001: MELISGLPED VARDCLIRVS YQQFPTVASV CKLWKSEIHA PEFHRQRRST KHTQKVIAMV QAHVEPGTGS TKRVKNPVYW LSVFEPETGN WSKIPPPPEF
101: YSGLPMFCQL VSVGYDLVVL GGLDPNSWEA SNSVFVYNFL SAKWRRGTDM PGGRRMFFSC ASDSEGTVFV AGGHDNEKNA LRSALAYDVS SDRWVVLPDM
201: AAERDECKGV FSRGRFVAVG GYPTETQGRF VKSAEAFDPA TRSWSEVKDF LDCATCPRTF VDGGDDEGVF LCSGEDLIAL RGDTWQKMAS LPGEIRNVSY
301: VGAFDGTLVL IGSSGYGEVH VAYAFDVKSC NGRKLESPEG FRGHVQTGCV LEI

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.