Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87309 | Canola | cytosol | 94.99 | 94.99 |
| AT1G80440.1 | Thale cress | cytosol | 79.39 | 80.51 |
| CDY36579 | Canola | cytosol | 63.79 | 63.97 |
| CDY58028 | Canola | cytosol | 62.95 | 63.13 |
| CDY53309 | Canola | cytosol | 62.67 | 62.85 |
| CDY69686 | Canola | cytosol | 61.84 | 62.18 |
| VIT_09s0002g08870.t01 | Wine grape | cytosol | 16.99 | 53.51 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 10.86 | 52.7 |
| KRH47516 | Soybean | cytosol | 48.47 | 49.15 |
| VIT_09s0002g05080.t01 | Wine grape | cytosol | 48.47 | 49.01 |
| Solyc03g120320.1.1 | Tomato | cytosol | 48.47 | 49.01 |
| PGSC0003DMT400006584 | Potato | cytosol | 47.91 | 48.45 |
| VIT_09s0002g05010.t01 | Wine grape | cytosol, peroxisome, plastid | 40.67 | 47.87 |
| PGSC0003DMT400042651 | Potato | cytosol | 47.91 | 47.51 |
| PGSC0003DMT400042652 | Potato | cytosol | 47.35 | 46.96 |
| KRH23494 | Soybean | cytosol | 46.8 | 46.93 |
| Solyc06g066770.1.1 | Tomato | cytosol | 47.35 | 46.32 |
| KRH44388 | Soybean | cytosol | 45.13 | 45.89 |
| PGSC0003DMT400006583 | Potato | cytosol | 45.13 | 45.0 |
| Solyc03g120330.1.1 | Tomato | cytosol | 45.13 | 44.88 |
| VIT_09s0002g08860.t01 | Wine grape | cytosol | 43.45 | 44.83 |
| PGSC0003DMT400042650 | Potato | cytosol | 46.8 | 44.44 |
| VIT_09s0002g04930.t01 | Wine grape | cytosol | 18.66 | 43.51 |
| VIT_09s0002g08880.t01 | Wine grape | cytosol | 34.54 | 40.26 |
| KRH09825 | Soybean | cytosol | 42.9 | 40.21 |
| Os02t0208700-00 | Rice | cytosol | 33.43 | 39.09 |
| VIT_09s0002g05210.t01 | Wine grape | cytosol | 13.93 | 37.31 |
| Zm00001d036925_P001 | Maize | cytosol | 39.28 | 36.81 |
| EER88591 | Sorghum | cytosol | 39.28 | 36.62 |
| TraesCS6A01G178900.1 | Wheat | cytosol | 37.88 | 36.56 |
| TraesCS6B01G206300.1 | Wheat | cytosol | 37.88 | 36.56 |
| Os06t0594400-02 | Rice | cytosol | 38.44 | 36.22 |
| TraesCS6D01G165600.1 | Wheat | cytosol | 35.65 | 36.06 |
| EES06499 | Sorghum | cytosol | 37.05 | 35.66 |
| TraesCS7D01G352400.1 | Wheat | cytosol | 37.33 | 34.81 |
| TraesCS7B01G257400.1 | Wheat | cytosol | 36.77 | 34.29 |
| CDX83439 | Canola | cytosol | 28.41 | 26.15 |
| CDX95589 | Canola | cytosol | 27.58 | 25.38 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 25.91 | 24.28 |
| CDY41196 | Canola | nucleus | 27.02 | 24.25 |
| CDX79780 | Canola | cytosol | 28.13 | 24.16 |
| CDX71859 | Canola | cytosol | 27.02 | 24.13 |
Protein Annotations
| EnsemblPlants:CDY39979 | EnsemblPlantsGene:GSBRNA2T00068867001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF93 |
| PFAM:PF01344 | ProteinID:CDY39979 | ProteinID:CDY39979.1 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI0004EDB086 | UniProt:A0A078HRS6 | MapMan:9.2.1.1.2 | : | : | : |
Description
BnaC06g40570DBnaC06g40570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRS6]
Coordinates
chrLK032461:-:212998..214379
Molecular Weight (calculated)
39314.5 Da
IEP (calculated)
4.891
GRAVY (calculated)
-0.109
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MELIPNLPYD VARECLLRSS YKQFPVMASV CRGWNREVSV SEFFQQRKAS GHSQELLIMS QARVDTDREP GSGKNFASPE YRVAVLESGS GLWTELPPIP
101: GRLNGLPLFC KLVSIGSDLI VLGGLDPVTW QASDSVFVFS FLNSKWRAGA TMPGVKRSFF GCASDSDRTV LVTGGHDEEK QALTSAIVYD LAEDEWTFLP
201: DMSRERDECK AIFHAGKFHV IGGYATEEQG QFSKSAESFD VCTWQWGPVR EEFLDGGETV SAPIYATTGE NGDLYACWRG DVMVLRNGTW QIVGQIPADV
301: YSVAYAAARP GKLTVIGNGK ALAGYGGATV GYICDLGSFR WVKLETHVGH VQAGCFLEV
101: GRLNGLPLFC KLVSIGSDLI VLGGLDPVTW QASDSVFVFS FLNSKWRAGA TMPGVKRSFF GCASDSDRTV LVTGGHDEEK QALTSAIVYD LAEDEWTFLP
201: DMSRERDECK AIFHAGKFHV IGGYATEEQG QFSKSAESFD VCTWQWGPVR EEFLDGGETV SAPIYATTGE NGDLYACWRG DVMVLRNGTW QIVGQIPADV
301: YSVAYAAARP GKLTVIGNGK ALAGYGGATV GYICDLGSFR WVKLETHVGH VQAGCFLEV
001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
Arabidopsis Description
F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.