Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G206300.1 | Wheat | cytosol | 97.46 | 93.01 |
| TraesCS6A01G178900.1 | Wheat | cytosol | 94.65 | 90.32 |
| Os02t0208700-00 | Rice | cytosol | 59.72 | 69.06 |
| EES06499 | Sorghum | cytosol | 64.79 | 61.66 |
| TraesCS7D01G352400.1 | Wheat | cytosol | 66.48 | 61.3 |
| GSMUA_Achr5P06210_001 | Banana | cytosol | 46.2 | 46.99 |
| GSMUA_Achr5P24900_001 | Banana | cytosol | 45.07 | 46.51 |
| VIT_09s0002g08870.t01 | Wine grape | cytosol | 13.52 | 42.11 |
| GSMUA_Achr10P... | Banana | cytosol | 41.13 | 40.9 |
| GSMUA_Achr10P... | Banana | cytosol | 42.25 | 40.87 |
| VIT_09s0002g05080.t01 | Wine grape | cytosol | 40.85 | 40.85 |
| GSMUA_Achr10P... | Banana | cytosol | 40.56 | 40.45 |
| VIT_09s0002g05010.t01 | Wine grape | cytosol, peroxisome, plastid | 34.65 | 40.33 |
| VIT_09s0002g08880.t01 | Wine grape | cytosol | 33.8 | 38.96 |
| KRH23494 | Soybean | cytosol | 39.15 | 38.83 |
| PGSC0003DMT400006584 | Potato | cytosol | 38.59 | 38.59 |
| GSMUA_Achr10P... | Banana | cytosol | 38.59 | 38.48 |
| Solyc03g120320.1.1 | Tomato | cytosol | 38.03 | 38.03 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 30.14 | 37.94 |
| KRH47516 | Soybean | cytosol | 37.75 | 37.85 |
| VIT_09s0002g08860.t01 | Wine grape | cytosol | 36.62 | 37.36 |
| KRH44388 | Soybean | cytosol | 36.9 | 37.11 |
| AT1G80440.1 | Thale cress | cytosol | 36.9 | 37.01 |
| Bra026116.1-P | Field mustard | cytosol | 36.9 | 36.59 |
| CDY36579 | Canola | cytosol | 36.9 | 36.59 |
| CDY58028 | Canola | cytosol | 36.62 | 36.31 |
| Solyc06g066770.1.1 | Tomato | cytosol | 37.46 | 36.24 |
| PGSC0003DMT400042651 | Potato | cytosol | 36.9 | 36.19 |
| Bra035183.1-P | Field mustard | cytosol | 36.34 | 35.93 |
| CDY69686 | Canola | cytosol | 36.06 | 35.85 |
| CDY53309 | Canola | cytosol | 36.06 | 35.75 |
| Bra026753.1-P | Field mustard | cytosol | 36.06 | 35.75 |
| CDY39979 | Canola | cytosol | 36.06 | 35.65 |
| KRH09825 | Soybean | cytosol | 38.31 | 35.51 |
| CDX87309 | Canola | cytosol | 35.77 | 35.38 |
| PGSC0003DMT400042652 | Potato | cytosol | 36.06 | 35.36 |
| PGSC0003DMT400006583 | Potato | cytosol | 35.77 | 35.28 |
| Solyc03g120330.1.1 | Tomato | cytosol | 35.77 | 35.18 |
| AT1G15670.1 | Thale cress | cytosol | 35.21 | 34.82 |
| PGSC0003DMT400042650 | Potato | cytosol | 36.34 | 34.13 |
| TraesCS4D01G084900.1 | Wheat | cytosol | 32.11 | 30.81 |
| VIT_09s0002g04930.t01 | Wine grape | cytosol | 12.96 | 29.87 |
| VIT_09s0002g05210.t01 | Wine grape | cytosol | 10.99 | 29.1 |
| TraesCS4D01G085000.1 | Wheat | plastid | 31.83 | 27.76 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G165600.1 | EnsemblPlantsGene:TraesCS6D01G165600 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PANTHER:PTHR24413 | PANTHER:PTHR24413:SF165 | PFAM:PF00646 | PFAM:PF01344 | SEG:seg | SMART:SM00256 |
| SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | MapMan:9.2.1.1.2 | : | : |
Description
No Description!
Coordinates
chr6D:-:144877526..144878634
Molecular Weight (calculated)
37434.6 Da
IEP (calculated)
6.701
GRAVY (calculated)
-0.005
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDLIPGLPE EVARECLLRV GFRQLPAARR TSRQWKAEVE SPLYGRLRRA NGHARPILAL AQALPPLAAS GPAHKYAASA ALSNSYRLVL HDPADGGWAT
101: LPPLPGGRGL PLFCQLAAVA CVERRKPVVV GGWDPETWAP TDTVHVYDFL EGAWRSGAPM PGPRRSFFAC AAAGGRVFVA GGHDEEKNAL RSAVAYDAEA
201: DAWAALPDMA LERDEPRGIC VGARFVVAFD TDAWAWDPVL DRLVDEGACP RTCCAAPSAA GAMYMLRGGH LAVRDGDSVW RVVAPVPEDG RAATVVVAIG
301: DGRVAAIGAG RHGGEQAVYV LSKEAGTNGA APSWARVLAP QEFAGHVQAA CCVEV
101: LPPLPGGRGL PLFCQLAAVA CVERRKPVVV GGWDPETWAP TDTVHVYDFL EGAWRSGAPM PGPRRSFFAC AAAGGRVFVA GGHDEEKNAL RSAVAYDAEA
201: DAWAALPDMA LERDEPRGIC VGARFVVAFD TDAWAWDPVL DRLVDEGACP RTCCAAPSAA GAMYMLRGGH LAVRDGDSVW RVVAPVPEDG RAATVVVAIG
301: DGRVAAIGAG RHGGEQAVYV LSKEAGTNGA APSWARVLAP QEFAGHVQAA CCVEV
001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
Arabidopsis Description
F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.