Factsheet for GSMUA_Achr10P23800_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	75.07	75.28
GSMUA_Achr10P...	Banana	cytosol	73.11	73.31
GSMUA_Achr10P...	Banana	cytosol	73.39	71.39
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	53.78	68.09
GSMUA_Achr5P06210_001	Banana	cytosol	49.86	51.0
GSMUA_Achr5P24900_001	Banana	cytosol	46.5	48.26
GSMUA_AchrUn_...	Banana	mitochondrion	9.24	44.59
Os02t0208700-00	Rice	cytosol	35.57	41.37
TraesCS6D01G165600.1	Wheat	cytosol	40.9	41.13
TraesCS6B01G206300.1	Wheat	cytosol	42.02	40.32
EER88591	Sorghum	cytosol	43.42	40.26
TraesCS6A01G178900.1	Wheat	cytosol	41.46	39.78
Zm00001d036925_P001	Maize	cytosol	42.58	39.69
EES06499	Sorghum	cytosol	40.62	38.87
TraesCS7B01G257400.1	Wheat	cytosol	41.74	38.7
Os06t0594400-02	Rice	cytosol	41.18	38.58
TraesCS7D01G352400.1	Wheat	cytosol	41.46	38.44
GSMUA_Achr6P06940_001	Banana	cytosol	28.29	27.3
GSMUA_Achr6P28790_001	Banana	cytosol	10.08	21.82

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.2	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G23800_001	EnsemblPlants:GSMUA_Achr10P23800_001	EnsemblPlants:GSMUA_Achr10T23800_001	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M0RKV5	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24413
PANTHER:PTHR24413:SF93	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000295913C
SEG:seg	:	:	:	:	:

Description

Putative F-box/kelch-repeat protein At1g15670 [Source:GMGC_GENE;Acc:GSMUA_Achr10G23800_001]

Coordinates

chr10:-:28363065..28364138

Molecular Weight (calculated)

39744.3 Da

IEP (calculated)

8.078

GRAVY (calculated)

-0.028

Length

357 amino acids

Sequence
(BLAST)

001: MEDLIPGLTD DVARECLARV PFINLRTLLS VCKLWRQELR NPTFHRFRKS IGIAQPVVVL VQPVPYSAQP TLPGPVVYRL VIFETTTGVW RSLPPCPFLP
101: HGLPLFCRLA AVGTELVVVG GWKPPTWATT DEVHVYDFLS GEWRRGSPLP SPLRSYFACA AMHDSDKGCR EVYIAGGRDE RKNALRSALA YDLASGSWKP
201: LPDMARERYE CRGVILRGKF LVLGRYSAET FDMAAGSWGP MEGAAVEEED EYPALYVTGE DGRLYRCAGR EVMVQLEGSV WAKVAELPSG MRQALYAVLW
301: EGKLMVIGFG HDYGFSANIL GMKATTTRTT MAAATWKKIE VPPEYRRSVL GACCLFI

Best Arabidopsis Sequence Match ( AT1G15670.1 )
(BLAST)

001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI

Arabidopsis Description

F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.