Factsheet for GSMUA_Achr6P06940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09070_001
GSMUA_Achr2P00240_001
GSMUA_Achr5P03950_001
GSMUA_Achr5P18560_001
GSMUA_Achr8P18960_001
GSMUA_Achr9P15990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59940.1	GSMUA_Achr11P...	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr11P...	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr1P09070_001	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr2P00240_001	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr5P03950_001	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr5P18560_001	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr8P18960_001	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr9P15990_001	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr11P...	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr11P...	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr1P09070_001	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr2P00240_001	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr5P03950_001	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr5P18560_001	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr8P18960_001	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr9P15990_001	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P28790_001	Banana	cytosol	26.49	59.39
GSMUA_AchrUn_...	Banana	mitochondrion	8.38	41.89
TraesCS4A01G228600.1	Wheat	cytosol	40.0	40.22
TraesCS4B01G087600.1	Wheat	cytosol	40.0	40.22
Zm00001d049016_P001	Maize	cytosol	39.73	39.52
Zm00001d007274_P001	Maize	cytosol	39.46	39.14
HORVU4Hr1G014970.1	Barley	cytosol	38.92	39.02
TraesCS4B01G087800.1	Wheat	cytosol	38.92	38.92
TraesCS4D01G084900.1	Wheat	cytosol	38.65	38.65
Os11t0246200-00	Rice	cytosol	40.0	38.64
TraesCS4A01G228800.1	Wheat	cytosol	38.38	38.38
EES08254	Sorghum	cytosol	38.92	37.7
EES09544	Sorghum	cytosol	38.92	37.6
Zm00001d050815_P001	Maize	nucleus	37.84	37.53
TraesCS4D01G085000.1	Wheat	plastid	39.73	36.12
OQU85159	Sorghum	cytosol	36.22	34.9
Os02t0563000-00	Rice	cytosol	36.76	34.78
GSMUA_Achr5P24900_001	Banana	cytosol	27.84	29.94
PGSC0003DMT400060940	Potato	cytosol	27.03	29.15
KRH58914	Soybean	extracellular, plasma membrane	30.27	29.09
CDY17882	Canola	cytosol, mitochondrion, nucleus	30.0	28.98
CDX83439	Canola	cytosol	30.54	28.97
AT2G44130.1	Thale cress	cytosol	31.89	28.85
Solyc10g080610.1.1	Tomato	cytosol	26.76	28.78
CDX95589	Canola	cytosol	30.27	28.72
Bra000342.1-P	Field mustard	cytosol	30.81	28.43
GSMUA_Achr5P06210_001	Banana	cytosol	26.76	28.37
GSMUA_Achr10P...	Banana	cytosol	27.3	28.29
CDX79780	Canola	cytosol	31.89	28.23
GSMUA_Achr10P...	Banana	cytosol	27.03	28.09
GSMUA_Achr10P...	Banana	cytosol	27.84	28.07
CDX71859	Canola	cytosol	30.0	27.61
Bra004807.1-P	Field mustard	cytosol	31.89	27.51
CDY41196	Canola	nucleus	29.19	27.0
GSMUA_Achr10P...	Banana	cytosol	25.95	26.97
Bra007494.1-P	Field mustard	nucleus	30.27	26.67
AT3G59940.1	Thale cress	cytosol	30.0	26.55
VIT_05s0094g01590.t01	Wine grape	cytosol	24.59	24.93
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	15.68	20.57

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:9.2.1.1.2	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G06940_001	EnsemblPlants:GSMUA_Achr6P06940_001	EnsemblPlants:GSMUA_Achr6T06940_001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M0T4U3	PFAM:PF00646	PFAM:PF01344
PANTHER:PTHR24414	PANTHER:PTHR24414:SF34	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000295B8EA
SEG:seg	:	:	:	:	:

Description

Putative OsFBK25 - F-box domain and kelch repeat containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G06940_001]

Coordinates

chr6:+:4717951..4719135

Molecular Weight (calculated)

39195.0 Da

IEP (calculated)

5.350

GRAVY (calculated)

-0.331

Length

370 amino acids

Sequence
(BLAST)

001: MKEKRGREME RKEEGRQALI PGLPDDIALD CLARVPHRFH SGLRLVCYGW RDLATGPCFY QHRERIGAAE DLIFLVQALV KKGSGDGGEA KEEDEAENGC
101: SAAVCSPPTY GLSMYNATEG SWHRVVMAEP VPLFAHVRVL DLAGGEWRRG AAMTAARSFF ACAAVAGRVY VAGGHDAGKN ALREAEAYDA AADQWAAMPA
201: MGEERDECKG VAAGGQFWAV SGYGTEEQGM FGGAAERYDE AAGEWRREEG VSEAAAEGGS GGGDAAYVGV ARGRMWSVEC GGGRRGVREY AGSGRGWKEV
301: APLPEGAMSR PCAAAMGGGE RVFLMAATAE GNGSGPHRGW ILEAGSANWA RVETPVRFSG FAYSAAGVRL

Best Arabidopsis Sequence Match ( AT2G44130.1 )
(BLAST)

001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV

Arabidopsis Description

F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.