Factsheet for GSMUA_AchrUn_randomP03860_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plasma membrane 1
mitochondrion 5
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09070_001
GSMUA_Achr2P00240_001
GSMUA_Achr5P03950_001
GSMUA_Achr5P18560_001
GSMUA_Achr8P18960_001
GSMUA_Achr9P15990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	GSMUA_Achr11P...	AT2G37040.1	21798944
AT1G15670.1	GSMUA_Achr11P...	AT2G37040.1	21798944
AT1G15670.1	GSMUA_Achr1P09070_001	AT2G37040.1	21798944
AT1G15670.1	GSMUA_Achr2P00240_001	AT2G37040.1	21798944
AT1G15670.1	GSMUA_Achr5P03950_001	AT2G37040.1	21798944
AT1G15670.1	GSMUA_Achr5P18560_001	AT2G37040.1	21798944
AT1G15670.1	GSMUA_Achr8P18960_001	AT2G37040.1	21798944
AT1G15670.1	GSMUA_Achr9P15990_001	AT2G37040.1	21798944
AT1G15670.1	GSMUA_Achr11P...	AT3G53260.1	21798944
AT1G15670.1	GSMUA_Achr11P...	AT3G53260.1	21798944
AT1G15670.1	GSMUA_Achr1P09070_001	AT3G53260.1	21798944
AT1G15670.1	GSMUA_Achr2P00240_001	AT3G53260.1	21798944
AT1G15670.1	GSMUA_Achr5P03950_001	AT3G53260.1	21798944
AT1G15670.1	GSMUA_Achr5P18560_001	AT3G53260.1	21798944
AT1G15670.1	GSMUA_Achr8P18960_001	AT3G53260.1	21798944
AT1G15670.1	GSMUA_Achr9P15990_001	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g08870.t01	Wine grape	cytosol	37.84	24.56
GSMUA_Achr5P24900_001	Banana	cytosol	58.11	12.5
GSMUA_Achr5P06210_001	Banana	cytosol	56.76	12.03
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	48.65	11.8
CDY69686	Canola	cytosol	56.76	11.76
Bra026116.1-P	Field mustard	cytosol	56.76	11.73
Bra026753.1-P	Field mustard	cytosol	56.76	11.73
CDY36579	Canola	cytosol	56.76	11.73
CDY53309	Canola	cytosol	56.76	11.73
CDY58028	Canola	cytosol	56.76	11.73
VIT_09s0002g08880.t01	Wine grape	cytosol	48.65	11.69
VIT_09s0002g05080.t01	Wine grape	cytosol	55.41	11.55
KRH23494	Soybean	cytosol	55.41	11.45
AT1G80440.1	Thale cress	cytosol	54.05	11.3
KRH47516	Soybean	cytosol	54.05	11.3
GSMUA_Achr10P...	Banana	cytosol	55.41	11.17
AT1G15670.1	Thale cress	cytosol	54.05	11.14
PGSC0003DMT400006584	Potato	cytosol	52.7	10.99
KRH09825	Soybean	cytosol	56.76	10.97
Bra035183.1-P	Field mustard	cytosol	52.7	10.86
CDY39979	Canola	cytosol	52.7	10.86
KRH44388	Soybean	cytosol	51.35	10.76
Solyc03g120320.1.1	Tomato	cytosol	51.35	10.7
VIT_09s0002g08860.t01	Wine grape	cytosol	50.0	10.63
CDX87309	Canola	cytosol	51.35	10.59
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	39.19	10.28
Solyc03g120330.1.1	Tomato	cytosol	50.0	10.25
GSMUA_Achr10P...	Banana	cytosol	48.65	10.11
PGSC0003DMT400006583	Potato	cytosol	48.65	10.0
Solyc06g066770.1.1	Tomato	cytosol	48.65	9.81
PGSC0003DMT400042652	Potato	cytosol	47.3	9.67
PGSC0003DMT400042651	Potato	cytosol	47.3	9.67
GSMUA_Achr10P...	Banana	cytosol	45.95	9.55
PGSC0003DMT400042650	Potato	cytosol	47.3	9.26
GSMUA_Achr10P...	Banana	cytosol	44.59	9.24
GSMUA_Achr6P06940_001	Banana	cytosol	41.89	8.38
VIT_09s0002g04930.t01	Wine grape	cytosol	13.51	6.49
GSMUA_Achr6P28790_001	Banana	cytosol	10.81	4.85
VIT_09s0002g05210.t01	Wine grape	cytosol	8.11	4.48

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP03860_001	EnsemblPlants:GSMUA_AchrUn_randomT03860_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG03860_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24413	PANTHER:PTHR24413:SF144	SUPFAM:SSF117281
UniParc:UPI000294D5D6	UniProt:M0U648	MapMan:35.2	:	:	:

Description

Putative F-box/kelch-repeat protein At1g15670 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG03860_001]

Coordinates

chrchrUn_random:+:17563298..17563522

Molecular Weight (calculated)

8641.2 Da

IEP (calculated)

10.577

GRAVY (calculated)

-1.082

Length

74 amino acids

Sequence
(BLAST)

1: MSSTWRHGAR MPRSRWSFAC TTSKELRGGV RRQRHDEEKN ALRSAIAYDV TADKWALLPD MARERDECGG DFRR

Best Arabidopsis Sequence Match ( AT1G15670.1 )
(BLAST)

001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI

Arabidopsis Description

F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.