Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026116.1-P | Field mustard | cytosol | 81.89 | 82.12 |
| CDY36579 | Canola | cytosol | 81.89 | 82.12 |
| CDY58028 | Canola | cytosol | 81.62 | 81.84 |
| CDY69686 | Canola | cytosol | 80.78 | 81.23 |
| Bra026753.1-P | Field mustard | cytosol | 79.67 | 79.89 |
| CDY53309 | Canola | cytosol | 79.67 | 79.89 |
| AT1G80440.1 | Thale cress | cytosol | 67.41 | 68.36 |
| VIT_09s0002g08870.t01 | Wine grape | cytosol | 17.27 | 54.39 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 11.14 | 54.05 |
| KRH47516 | Soybean | cytosol | 49.86 | 50.56 |
| KRH44388 | Soybean | cytosol | 47.91 | 48.73 |
| KRH23494 | Soybean | cytosol | 47.63 | 47.77 |
| VIT_09s0002g05080.t01 | Wine grape | cytosol | 46.8 | 47.32 |
| PGSC0003DMT400042651 | Potato | cytosol | 47.63 | 47.24 |
| PGSC0003DMT400042652 | Potato | cytosol | 47.35 | 46.96 |
| VIT_09s0002g05010.t01 | Wine grape | cytosol, peroxisome, plastid | 39.28 | 46.23 |
| Solyc06g066770.1.1 | Tomato | cytosol | 46.8 | 45.78 |
| Solyc03g120320.1.1 | Tomato | cytosol | 45.13 | 45.63 |
| VIT_09s0002g08860.t01 | Wine grape | cytosol | 44.01 | 45.4 |
| PGSC0003DMT400006584 | Potato | cytosol | 44.85 | 45.35 |
| PGSC0003DMT400042650 | Potato | cytosol | 47.63 | 45.24 |
| Solyc03g120330.1.1 | Tomato | cytosol | 44.85 | 44.6 |
| PGSC0003DMT400006583 | Potato | cytosol | 44.01 | 43.89 |
| KRH09825 | Soybean | cytosol | 43.45 | 40.73 |
| VIT_09s0002g08880.t01 | Wine grape | cytosol | 34.82 | 40.58 |
| VIT_09s0002g04930.t01 | Wine grape | cytosol | 17.27 | 40.26 |
| Os02t0208700-00 | Rice | cytosol | 32.59 | 38.11 |
| Os06t0594400-02 | Rice | cytosol | 40.11 | 37.8 |
| TraesCS6B01G206300.1 | Wheat | cytosol | 37.33 | 36.02 |
| TraesCS6A01G178900.1 | Wheat | cytosol | 37.33 | 36.02 |
| TraesCS7D01G352400.1 | Wheat | cytosol | 38.44 | 35.84 |
| EER88591 | Sorghum | cytosol | 38.44 | 35.84 |
| Zm00001d036925_P001 | Maize | cytosol | 37.88 | 35.51 |
| TraesCS7B01G257400.1 | Wheat | cytosol | 37.88 | 35.32 |
| TraesCS6D01G165600.1 | Wheat | cytosol | 34.82 | 35.21 |
| VIT_09s0002g05210.t01 | Wine grape | cytosol | 12.81 | 34.33 |
| EES06499 | Sorghum | cytosol | 35.1 | 33.78 |
| AT2G44130.1 | Thale cress | cytosol | 30.08 | 26.41 |
| AT3G59940.1 | Thale cress | cytosol | 28.41 | 24.4 |
Protein Annotations
| Gene3D:2.120.10.80 | EntrezGene:838136 | MapMan:9.2.1.1.2 | ProteinID:AAF82137.1 | ProteinID:AEE29347.1 | EMBL:AF332423 |
| EMBL:AK228088 | ArrayExpress:AT1G15670 | EnsemblPlantsGene:AT1G15670 | RefSeq:AT1G15670 | TAIR:AT1G15670 | RefSeq:AT1G15670-TAIR-G |
| EnsemblPlants:AT1G15670.1 | TAIR:AT1G15670.1 | EMBL:AY049307 | EMBL:AY057738 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009719 | GO:GO:0009987 | GO:GO:0019005 | GO:GO:0019538 | GO:GO:0019748 | GO:GO:0030162 |
| GO:GO:0031625 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0080037 | GO:GO:2000762 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_563979.1 | PFAM:PF13964 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF93 | UniProt:Q9LMR5 |
| SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI00000A2C22 | : | : | : |
Description
F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
Coordinates
chr1:+:5389952..5391672
Molecular Weight (calculated)
40180.8 Da
IEP (calculated)
5.431
GRAVY (calculated)
-0.187
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.