Factsheet for VIT_09s0002g05010.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g01510.t01
VIT_11s0016g01520.t01
VIT_11s0016g01640.t01
VIT_11s0016g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	VIT_11s0016g01510.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01510.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g05080.t01	Wine grape	cytosol	97.38	83.66
VIT_09s0002g04930.t01	Wine grape	cytosol	34.43	68.18
VIT_09s0002g08870.t01	Wine grape	cytosol	21.64	57.89
VIT_09s0002g05210.t01	Wine grape	cytosol	24.59	55.97
Solyc03g120320.1.1	Tomato	cytosol	56.72	48.73
PGSC0003DMT400006584	Potato	cytosol	56.72	48.73
GSMUA_AchrUn_...	Banana	mitochondrion	11.8	48.65
VIT_09s0002g08880.t01	Wine grape	cytosol	48.52	48.05
VIT_09s0002g08860.t01	Wine grape	cytosol	54.75	47.99
KRH47516	Soybean	cytosol	54.1	46.61
KRH44388	Soybean	cytosol	52.79	45.61
KRH23494	Soybean	cytosol	53.11	45.25
KRH09825	Soybean	cytosol	53.77	42.82
AT1G80440.1	Thale cress	cytosol	48.2	41.53
CDY39979	Canola	cytosol	47.87	40.67
Bra035183.1-P	Field mustard	cytosol	47.21	40.11
CDY58028	Canola	cytosol	46.89	39.94
CDY53309	Canola	cytosol	46.89	39.94
CDY36579	Canola	cytosol	46.89	39.94
Bra026753.1-P	Field mustard	cytosol	46.89	39.94
Bra026116.1-P	Field mustard	cytosol	46.89	39.94
CDX87309	Canola	cytosol	46.56	39.55
CDY69686	Canola	cytosol	46.23	39.5
AT1G15670.1	Thale cress	cytosol	46.23	39.28
EES06499	Sorghum	cytosol	46.56	38.07
TraesCS7B01G257400.1	Wheat	cytosol	47.54	37.66
Os06t0594400-02	Rice	cytosol	46.89	37.53
Os02t0208700-00	Rice	cytosol	37.7	37.46
TraesCS7D01G352400.1	Wheat	cytosol	47.21	37.4
Zm00001d036925_P001	Maize	cytosol	46.89	37.34
EER88591	Sorghum	cytosol	46.23	36.62
TraesCS6A01G178900.1	Wheat	cytosol	43.93	36.02
TraesCS6B01G206300.1	Wheat	cytosol	43.61	35.75
TraesCS6D01G165600.1	Wheat	cytosol	40.33	34.65
VIT_08s0007g07120.t01	Wine grape	cytosol	32.13	28.57
VIT_05s0094g01590.t01	Wine grape	cytosol	25.25	21.1

Protein Annotations

EntrezGene:100241253	Gene3D:2.120.10.80	MapMan:9.2.1.1.2	ProteinID:CCB59502	ProteinID:CCB59502.1	InterPro:F-box-like_dom_sf
UniProt:F6HX32	EMBL:FN596494	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625
GO:GO:0042787	GO:GO:0043161	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100241253
PFAM:PF01344	PANTHER:PTHR24413	PANTHER:PTHR24413:SF93	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI00015C8DAE	ArrayExpress:VIT_09s0002g05010	EnsemblPlantsGene:VIT_09s0002g05010	EnsemblPlants:VIT_09s0002g05010.t01	RefSeq:XP_019077609.1	SEG:seg

Description

No Description!

Coordinates

chr9:-:4636353..4637439

Molecular Weight (calculated)

34424.8 Da

IEP (calculated)

4.821

GRAVY (calculated)

-0.279

Length

305 amino acids

Sequence
(BLAST)

001: MDFIPGLPDD VARQCLIRVY YEKFSTIAAV CRVWKSEVED PDFFRQRKTA GYTRPVFAKA QARVVPNRSS GGMKCPTLAY RVTLLDLETG NWRELPPVPG
101: FSDGLPMFCQ LVGVESELVV VGGWDPDTWE VSSSVFIYNF LSATWRRGAD MPGARRSFFG CAASGLERVV YVGEKNALKS ALVYDVAKDE WAPLPDMARE
201: SDECKGVFHR GKFHVIGGYC TEMQGRFERS AEAFDFANWE WDKAEEDFLE DSTCPRTCVD GGDMGMYMCH AGEVVALQDC RWQTVDKLPA EIRHTAYMTT
301: WEGKL

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.