Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G352400.1 | Wheat | cytosol | 96.36 | 96.36 |
| Os06t0594400-02 | Rice | cytosol | 77.66 | 78.48 |
| EER88591 | Sorghum | cytosol | 75.58 | 75.58 |
| Zm00001d036925_P001 | Maize | cytosol | 73.25 | 73.63 |
| TraesCS6B01G206300.1 | Wheat | cytosol | 63.9 | 66.13 |
| VIT_09s0002g08870.t01 | Wine grape | cytosol | 15.84 | 53.51 |
| GSMUA_Achr5P06210_001 | Banana | cytosol | 45.97 | 50.72 |
| GSMUA_Achr5P24900_001 | Banana | cytosol | 44.94 | 50.29 |
| VIT_09s0002g05080.t01 | Wine grape | cytosol | 43.9 | 47.61 |
| VIT_09s0002g05010.t01 | Wine grape | cytosol, peroxisome, plastid | 37.66 | 47.54 |
| GSMUA_Achr10P... | Banana | cytosol | 42.34 | 44.41 |
| KRH47516 | Soybean | cytosol | 40.0 | 43.5 |
| KRH23494 | Soybean | cytosol | 40.26 | 43.3 |
| KRH44388 | Soybean | cytosol | 39.48 | 43.06 |
| PGSC0003DMT400006584 | Potato | cytosol | 39.22 | 42.54 |
| Solyc03g120320.1.1 | Tomato | cytosol | 38.96 | 42.25 |
| VIT_09s0002g08880.t01 | Wine grape | cytosol | 33.77 | 42.21 |
| GSMUA_Achr10P... | Banana | cytosol | 38.7 | 41.74 |
| VIT_09s0002g04930.t01 | Wine grape | cytosol | 16.62 | 41.56 |
| GSMUA_Achr10P... | Banana | cytosol | 38.18 | 41.29 |
| Solyc03g120330.1.1 | Tomato | cytosol | 38.18 | 40.72 |
| VIT_09s0002g08860.t01 | Wine grape | cytosol | 36.62 | 40.52 |
| PGSC0003DMT400006583 | Potato | cytosol | 37.66 | 40.28 |
| CDY36579 | Canola | cytosol | 37.14 | 39.94 |
| Bra026116.1-P | Field mustard | cytosol | 37.14 | 39.94 |
| GSMUA_Achr10P... | Banana | cytosol | 36.88 | 39.89 |
| KRH09825 | Soybean | cytosol | 39.48 | 39.69 |
| CDY58028 | Canola | cytosol | 36.88 | 39.66 |
| Solyc06g066770.1.1 | Tomato | cytosol | 37.66 | 39.51 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 28.83 | 39.36 |
| PGSC0003DMT400042651 | Potato | cytosol | 36.88 | 39.23 |
| CDY69686 | Canola | cytosol | 36.1 | 38.94 |
| PGSC0003DMT400042652 | Potato | cytosol | 36.36 | 38.67 |
| Bra026753.1-P | Field mustard | cytosol | 35.84 | 38.55 |
| CDY53309 | Canola | cytosol | 35.84 | 38.55 |
| AT1G80440.1 | Thale cress | cytosol | 35.32 | 38.42 |
| VIT_09s0002g05210.t01 | Wine grape | cytosol | 13.25 | 38.06 |
| AT1G15670.1 | Thale cress | cytosol | 35.32 | 37.88 |
| PGSC0003DMT400042650 | Potato | cytosol | 36.36 | 37.04 |
| Bra035183.1-P | Field mustard | cytosol | 34.29 | 36.77 |
| CDY39979 | Canola | cytosol | 34.29 | 36.77 |
| CDX87309 | Canola | cytosol | 33.77 | 36.21 |
| TraesCS4B01G087600.1 | Wheat | cytosol | 31.43 | 32.88 |
| TraesCS4B01G087800.1 | Wheat | cytosol | 31.43 | 32.7 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G257400.1 | EnsemblPlantsGene:TraesCS7B01G257400 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 |
| PANTHER:PTHR24413:SF165 | PFAM:PF00646 | PFAM:PF01344 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 |
| MapMan:9.2.1.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:477779231..477780388
Molecular Weight (calculated)
40820.2 Da
IEP (calculated)
5.024
GRAVY (calculated)
-0.159
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSCFEASAM SDLIPGLPEE VARECLIRVG FDQLPAVRRI SRQWKEEVES PDYGRLRRAE GLARPVVAMV QAQPEHVEPG PAQKHASASA ANGGSANNYR
101: MVLLDPVEGR WAPLPVLPGT TGSLPLFCQV AAVDGAQGRK RLVVVGGWDP ESWAPTDSVY VYDFLTGAWR RGAPMPGPRR SFFATAAVRG VVYVAGGHDE
201: EKNALRSALA YDPDADAWAA LPDMAEERDE PRGLCVGGRF LVVGGYPTQA QGRFAGSAEA FDPATAAWAT VQESLLEDGT CPRTCCVAPG AERMYMLRDG
301: NLVARDAGAS AGWRTVASVP EDARTASTVS AIPGGRVVVI GSGCHGGDQT VYMLRDEAGK AASWARAPAP PEFSGHVQAA CLLEI
101: MVLLDPVEGR WAPLPVLPGT TGSLPLFCQV AAVDGAQGRK RLVVVGGWDP ESWAPTDSVY VYDFLTGAWR RGAPMPGPRR SFFATAAVRG VVYVAGGHDE
201: EKNALRSALA YDPDADAWAA LPDMAEERDE PRGLCVGGRF LVVGGYPTQA QGRFAGSAEA FDPATAAWAT VQESLLEDGT CPRTCCVAPG AERMYMLRDG
301: NLVARDAGAS AGWRTVASVP EDARTASTVS AIPGGRVVVI GSGCHGGDQT VYMLRDEAGK AASWARAPAP PEFSGHVQAA CLLEI
001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
Arabidopsis Description
F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.