Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G030600.1 | Wheat | peroxisome | 16.49 | 100.0 |
| Os02t0626100-01 | Rice | extracellular, plasma membrane | 78.2 | 75.75 |
| Zm00001d051161_P003 | Maize | plastid | 76.58 | 73.97 |
| EES07174 | Sorghum | cytosol, peroxisome, plastid | 76.58 | 73.86 |
| Zm00001d017274_P001 | Maize | plasma membrane | 76.44 | 73.83 |
| CDY18464 | Canola | peroxisome | 40.94 | 65.72 |
| CDX67566 | Canola | cytosol | 45.8 | 63.34 |
| AT3G10340.1 | Thale cress | peroxisome | 65.83 | 63.22 |
| CDX78161 | Canola | cytosol | 46.1 | 63.1 |
| CDX73567 | Canola | cytosol | 45.95 | 62.9 |
| Bra029831.1-P | Field mustard | cytosol | 65.1 | 62.61 |
| CDY08611 | Canola | cytosol | 65.1 | 62.61 |
| CDY00922 | Canola | cytosol | 64.95 | 62.46 |
| CDX99621 | Canola | mitochondrion | 50.07 | 62.16 |
| CDY66761 | Canola | cytosol, peroxisome, plastid | 47.28 | 61.85 |
| Bra003126.1-P | Field mustard | cytosol | 64.06 | 61.53 |
| AT3G53260.1 | Thale cress | cytosol | 64.95 | 61.51 |
| CDX76219 | Canola | cytosol | 47.13 | 61.3 |
| AT2G37040.1 | Thale cress | cytosol, peroxisome, plastid | 65.1 | 60.97 |
| Bra006985.1-P | Field mustard | cytosol | 63.03 | 60.62 |
| Bra017210.1-P | Field mustard | cytosol, peroxisome, plastid | 64.36 | 60.53 |
| AT5G04230.2 | Thale cress | peroxisome | 61.71 | 60.03 |
| Bra039777.1-P | Field mustard | peroxisome | 44.33 | 59.02 |
| CDY15917 | Canola | cytosol, peroxisome, plastid | 60.53 | 58.88 |
| Bra030322.1-P | Field mustard | cytosol, peroxisome, plastid | 60.38 | 58.74 |
| CDY13306 | Canola | peroxisome | 16.64 | 53.81 |
| Bra005221.1-P | Field mustard | peroxisome | 29.01 | 53.1 |
| CDY18463 | Canola | peroxisome | 19.88 | 51.33 |
| CDX74991 | Canola | peroxisome | 28.72 | 51.32 |
| CDX91331 | Canola | peroxisome | 28.72 | 51.32 |
| VIT_11s0016g01640.t01 | Wine grape | peroxisome | 49.04 | 50.08 |
| GSMUA_Achr9P15990_001 | Banana | peroxisome | 51.25 | 49.5 |
| CDY61769 | Canola | peroxisome | 17.08 | 45.85 |
| Bra028793.1-P | Field mustard | peroxisome | 19.0 | 43.88 |
| VIT_11s0016g01520.t01 | Wine grape | peroxisome | 55.96 | 42.46 |
| VIT_11s0016g01660.t01 | Wine grape | peroxisome | 10.75 | 41.95 |
| VIT_11s0016g01510.t01 | Wine grape | peroxisome | 11.49 | 21.97 |
Protein Annotations
| KEGG:00360+4.3.1.24 | KEGG:00940+4.3.1.24 | Gene3D:1.10.274.20 | Gene3D:1.10.275.10 | Gene3D:1.20.200.10 | MapMan:9.2.1.1.1 |
| InterPro:Aromatic_Lyase | InterPro:Fumarase/histidase_N | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006559 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016841 | InterPro:IPR023144 | InterPro:IPR024083 | InterPro:L-Aspartase-like | PFAM:PF00221 |
| PANTHER:PTHR10362 | PANTHER:PTHR10362:SF11 | InterPro:Phe_NH3-lyase | InterPro:Phe_NH3-lyase_shielding_dom_sf | SUPFAM:SSF48557 | TIGRFAMs:TIGR01226 |
| EnsemblPlantsGene:TraesCSU01G030700 | EnsemblPlants:TraesCSU01G030700.1 | TIGR:cd00332 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrUn:-:28819759..28825439
Molecular Weight (calculated)
73414.9 Da
IEP (calculated)
6.660
GRAVY (calculated)
0.095
Length
679 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHFWSVAAA ELTGSHLDEV KRMVARFRGP VVRILGAGLS FGQVAAVAHA KDAASVTVEL ANEARVRVQA CSDWIVDSVA NGGDIYGVTT GFGGTSHRRT
101: KDGHGLQVEL VRHLIAGIFG TGSDHELPSE VTRASMLVHI NTLLQGFSGI RFEILEAITK LINKGVPPRI PLRGSITASG DVVPLAYIAG VLTGRPNAEA
201: LTHDGRKVDA AEAFKIAGID GGFFKLNPKE GLAIVNGTAA AAALAAMVLF DCNIFAVLSE VFSAMFCEVM YGKSEFADHL IHKLKHHPGT IEAAAIMEHI
301: LAGSPFMVYG KMVNDMDPHL KPKQDRYAIR TAPQWLGPQI EVIRAATKCI EREVNSMSDN PVIDVHRGIA LHGGNFQGTP IGVSMDNTRL AIASIGKLMF
401: AQFSELVNEF YNNGMTSNLA GSRDPSLDYG LKGIEIAMAA YCSELQYLAN PVTTHVQSAE QHNQGVNSLG LVSARKTAEA VEILKLMSST YLVALCQAVD
501: LRHLEQNIKI FVNRCVVQAA KKVVDATSVE KKLAAAVDRV DVFRYADNPC SANYPLMHKL RSVLLEHALA SRSTDDEVLS KISKLEEELV IALPREVEAA
601: RVAVEMGSAP ISNMIRGSRS FPLYQFVREE LGCVFLTGEK LLAPGEECDK VFVGISQGKL IDPMLECLKE WNGEPLPIN
101: KDGHGLQVEL VRHLIAGIFG TGSDHELPSE VTRASMLVHI NTLLQGFSGI RFEILEAITK LINKGVPPRI PLRGSITASG DVVPLAYIAG VLTGRPNAEA
201: LTHDGRKVDA AEAFKIAGID GGFFKLNPKE GLAIVNGTAA AAALAAMVLF DCNIFAVLSE VFSAMFCEVM YGKSEFADHL IHKLKHHPGT IEAAAIMEHI
301: LAGSPFMVYG KMVNDMDPHL KPKQDRYAIR TAPQWLGPQI EVIRAATKCI EREVNSMSDN PVIDVHRGIA LHGGNFQGTP IGVSMDNTRL AIASIGKLMF
401: AQFSELVNEF YNNGMTSNLA GSRDPSLDYG LKGIEIAMAA YCSELQYLAN PVTTHVQSAE QHNQGVNSLG LVSARKTAEA VEILKLMSST YLVALCQAVD
501: LRHLEQNIKI FVNRCVVQAA KKVVDATSVE KKLAAAVDRV DVFRYADNPC SANYPLMHKL RSVLLEHALA SRSTDDEVLS KISKLEEELV IALPREVEAA
601: RVAVEMGSAP ISNMIRGSRS FPLYQFVREE LGCVFLTGEK LLAPGEECDK VFVGISQGKL IDPMLECLKE WNGEPLPIN
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
Arabidopsis Description
PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.