Factsheet for Bra006985.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003126.1-P
Bra006985.1-P
Bra008685.1-P
Bra023527.1-P
Bra029831.1-P
Bra039777.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53260.1	Bra029831.1-P	AT3G10340.1	21798944
AT3G53260.1	Bra003126.1-P	AT3G53260.1	21798944
AT3G53260.1	Bra006985.1-P	AT3G53260.1	21798944
AT3G53260.1	Bra039777.1-P	AT3G53260.1	21798944
AT3G53260.1	Bra008685.1-P	AT5G15600.1	21798944
AT3G53260.1	Bra023527.1-P	AT5G15600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78161	Canola	cytosol	67.28	95.77
CDX73567	Canola	cytosol	67.0	95.36
Bra003126.1-P	Field mustard	cytosol	93.77	93.64
AT3G53260.1	Thale cress	cytosol	92.63	91.21
Bra039777.1-P	Field mustard	peroxisome	64.87	89.8
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	90.08	88.09
Bra005221.1-P	Field mustard	peroxisome	45.33	86.25
PGSC0003DMT400080765	Potato	peroxisome	51.7	83.91
Solyc03g036480.1.1	Tomato	peroxisome	12.04	83.33
Solyc03g042560.1.1	Tomato	peroxisome	53.82	81.55
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	79.18	81.37
PGSC0003DMT400055489	Potato	mitochondrion	45.04	81.33
KRG91925	Soybean	cytosol, peroxisome, plastid	80.59	79.36
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	79.6	79.04
Solyc10g086180.1.1	Tomato	extracellular	79.04	78.48
GSMUA_Achr1P09070_001	Banana	peroxisome	72.66	78.44
Bra029831.1-P	Field mustard	cytosol	78.19	78.19
Solyc09g007920.2.1	Tomato	extracellular, nucleus	79.32	77.67
GSMUA_Achr5P03950_001	Banana	cytosol, peroxisome, plastid	71.53	77.57
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	79.18	77.53
Solyc09g007910.2.1	Tomato	extracellular, nucleus	79.18	77.53
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	71.67	77.25
Solyc03g078280.1.1	Tomato	peroxisome	28.19	77.13
GSMUA_Achr2P00240_001	Banana	peroxisome	71.1	76.88
Solyc03g036470.1.1	Tomato	mitochondrion	24.93	76.86
GSMUA_Achr5P18560_001	Banana	cytosol, peroxisome, plastid	70.96	76.84
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	78.47	76.73
Solyc09g007890.1.1	Tomato	plastid	78.05	76.63
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	77.76	76.36
GSMUA_Achr8P18960_001	Banana	cytosol, peroxisome, plastid	64.87	76.21
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	74.08	75.91
TraesCS1A01G094900.1	Wheat	cytosol, peroxisome, plastid	53.26	75.5
TraesCS2B01G398100.1	Wheat	cytosol, peroxisome, plastid	55.52	75.38
TraesCS1D01G039300.1	Wheat	mitochondrion	56.09	75.14
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	38.81	75.07
TraesCS2D01G204400.1	Wheat	peroxisome	70.54	74.55
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	15.3	74.48
TraesCS2D01G377600.1	Wheat	plastid	74.22	73.91
PGSC0003DMT400055529	Potato	cytosol	17.42	73.65
HORVU2Hr1G089540.1	Barley	peroxisome	48.87	73.56
TraesCS1B01G048400.2	Wheat	cytosol, peroxisome, plastid	73.65	73.55
Os04t0518400-01	Rice	extracellular, plasma membrane	74.36	73.53
TraesCS2A01G381100.1	Wheat	plastid	74.22	73.49
TraesCS2B01G398000.2	Wheat	plastid	74.22	73.49
TraesCS2B01G224000.1	Wheat	peroxisome	73.51	73.41
TraesCS2A01G381000.1	Wheat	plastid	74.08	73.35
TraesCS2D01G377200.1	Wheat	cytosol, peroxisome, plastid	74.08	73.35
TraesCS2D01G377400.1	Wheat	cytosol, peroxisome, plastid	74.08	73.35
TraesCS2D01G377500.1	Wheat	cytosol, peroxisome, plastid	74.08	73.35
HORVU1Hr1G022060.1	Barley	cytosol, peroxisome, plastid	73.37	73.27
TraesCS2D01G204700.1	Wheat	peroxisome	73.37	73.27
TraesCS5B01G468300.1	Wheat	cytosol, peroxisome, plastid	73.37	73.27
TraesCS2B01G398400.1	Wheat	cytosol, peroxisome, plastid	73.94	73.21
TraesCS5B01G468400.1	Wheat	peroxisome	57.22	73.19
TraesCS1B01G122800.1	Wheat	cytosol, peroxisome, plastid	73.37	73.16
TraesCS1D01G103500.1	Wheat	cytosol, peroxisome, plastid	73.37	73.16
Zm00001d003015_P001	Maize	peroxisome	74.08	73.15
TraesCS1D01G039400.1	Wheat	golgi	73.23	73.13
OQU81984	Sorghum	peroxisome	73.94	73.11
TraesCS2A01G380800.1	Wheat	cytosol, peroxisome, plastid	73.8	73.07
TraesCS2B01G398200.1	Wheat	cytosol, peroxisome, plastid	73.8	73.07
HORVU2Hr1G038120.1	Barley	cytosol, peroxisome, plastid	73.09	72.98
TraesCS2D01G218700.1	Wheat	peroxisome	73.09	72.98
TraesCS1D01G039500.1	Wheat	cytosol, peroxisome, plastid	73.8	72.97
TraesCS2B01G224300.1	Wheat	cytosol, peroxisome, plastid	72.95	72.95
GSMUA_Achr11P...	Banana	peroxisome	66.43	72.94
TraesCS2A01G380900.1	Wheat	cytosol, peroxisome, plastid	73.65	72.93
TraesCS1A01G037700.1	Wheat	cytosol, peroxisome, plastid	72.95	72.84
TraesCS2A01G212900.1	Wheat	cytosol, peroxisome, plastid	72.95	72.84
TraesCS1B01G048200.1	Wheat	cytosol, peroxisome, plastid	73.65	72.83
TraesCS4A01G401300.1	Wheat	cytosol, peroxisome, plastid	73.51	72.79
TraesCS2A01G196700.1	Wheat	peroxisome	72.8	72.7
TraesCS1B01G048300.1	Wheat	cytosol, peroxisome, plastid	73.37	72.65
Zm00001d017276_P001	Maize	peroxisome	72.38	72.59
TraesCS1A01G037800.1	Wheat	cytosol, peroxisome, plastid	73.37	72.55
TraesCS1B01G048100.1	Wheat	cytosol, peroxisome, plastid	73.37	72.55
TraesCS1B01G048500.1	Wheat	cytosol, peroxisome, plastid	73.37	72.55
Os02t0627100-01	Rice	plasma membrane	73.23	72.51
Os05t0427400-00	Rice	cytosol, peroxisome, plastid	73.23	72.21
Os02t0626400-01	Rice	mitochondrion, plasma membrane	73.23	72.01
EES05455	Sorghum	cytosol, peroxisome, plastid	72.52	71.71
EES07176	Sorghum	cytosol, peroxisome, plastid	72.52	71.71
EES07177	Sorghum	cytosol, peroxisome, plastid	72.52	71.71
HORVU6Hr1G058840.1	Barley	cytosol, peroxisome, plasma membrane	72.24	71.63
TraesCS6B01G258600.1	Wheat	cytosol, peroxisome, plasma membrane	72.24	71.63
Zm00001d017279_P001	Maize	cytosol, peroxisome, plastid	72.52	71.61
TraesCS6B01G258500.1	Wheat	extracellular, unclear	72.38	71.57
HORVU0Hr1G016330.1	Barley	cytosol, peroxisome, plastid	72.38	71.47
TraesCS6A01G222800.1	Wheat	cytosol, peroxisome, plastid	72.24	71.43
TraesCS6D01G212400.1	Wheat	cytosol, peroxisome, plastid	72.1	71.29
Zm00001d051166_P001	Maize	extracellular	72.24	71.23
TraesCS6A01G222700.1	Wheat	cytosol, peroxisome, plasma membrane	71.81	71.21
TraesCS6D01G212500.1	Wheat	peroxisome	71.81	71.21
TraesCS2A01G196400.1	Wheat	mitochondrion, plastid	67.28	71.11
TraesCS2B01G398300.2	Wheat	peroxisome	36.97	70.92
Zm00001d051163_P002	Maize	peroxisome	72.1	70.89
Zm00001d017275_P001	Maize	extracellular	71.95	70.65
TraesCS2B01G020100.1	Wheat	peroxisome	67.85	70.34
EES07175	Sorghum	cytosol, peroxisome, plastid	71.39	70.19
TraesCS2A01G212600.1	Wheat	cytosol	26.06	69.43
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	68.56	69.34
Os04t0518100-01	Rice	plasma membrane	69.26	69.17
Os02t0626600-00	Rice	plasma membrane	69.83	68.95
Os02t0626100-01	Rice	extracellular, plasma membrane	67.99	68.47
HORVU2Hr1G089440.9	Barley	plasma membrane	74.36	68.45
TraesCS3B01G027800.1	Wheat	mitochondrion	52.69	68.38
EES12521	Sorghum	cytosol	67.99	68.28
TraesCS6A01G222900.1	Wheat	extracellular, golgi, unclear	67.99	68.18
TraesCS6B01G258400.2	Wheat	cytosol, peroxisome, plastid	67.99	68.18
TraesCS6D01G212200.1	Wheat	extracellular, golgi, unclear	67.99	68.18
Zm00001d017274_P001	Maize	plasma membrane	67.71	67.99
EES07174	Sorghum	cytosol, peroxisome, plastid	67.56	67.76
Zm00001d051161_P003	Maize	plastid	67.42	67.71
HORVU2Hr1G038140.1	Barley	mitochondrion, plastid	68.7	67.08
Zm00001d029015_P001	Maize	peroxisome	37.11	65.83
Zm00001d033286_P001	Maize	peroxisome	64.59	65.33
TraesCS3A01G029200.1	Wheat	peroxisome	62.89	64.44
TraesCS3B01G053900.1	Wheat	peroxisome	62.75	64.3
TraesCS3D01G016300.1	Wheat	peroxisome	62.75	64.3
Os12t0520200-01	Rice	plasma membrane	61.9	64.26
HORVU3Hr1G005330.2	Barley	cytosol, peroxisome, plasma membrane	62.46	63.91
EER93773	Sorghum	peroxisome	63.31	63.05
TraesCSU01G030700.1	Wheat	peroxisome	60.62	63.03
TraesCS3D01G016500.1	Wheat	peroxisome	61.05	62.55
Solyc03g071870.1.1	Tomato	peroxisome	15.16	62.21
HORVU6Hr1G058820.2	Barley	mitochondrion	62.04	61.78
Zm00001d003016_P001	Maize	plastid	67.99	60.84
Zm00001d027249_P001	Maize	peroxisome	18.7	59.19
Solyc10g011930.1.1	Tomato	cytosol	10.48	58.27
VIT_11s0016g01640.t01	Wine grape	peroxisome	54.25	57.59
Zm00001d020933_P001	Maize	mitochondrion	17.14	57.35
Solyc10g011920.1.1	Tomato	cytosol	10.2	56.69
GSMUA_Achr9P15990_001	Banana	peroxisome	54.67	54.91
Zm00001d053619_P001	Maize	mitochondrion	32.58	54.37
VIT_11s0016g01660.t01	Wine grape	peroxisome	13.31	54.02
Zm00001d051164_P001	Maize	peroxisome	11.9	53.5
Bra028793.1-P	Field mustard	peroxisome	21.81	52.38
HORVU2Hr1G062750.1	Barley	mitochondrion	13.31	51.09
VIT_11s0016g01520.t01	Wine grape	peroxisome	62.04	48.94
Os12t0461300-00	Rice	plastid	16.57	46.25
Os08t0308300-00	Rice	plastid	10.2	38.3
VIT_11s0016g01510.t01	Wine grape	peroxisome	12.46	24.79

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	MapMan:9.2.1.1.1
InterPro:Aromatic_Lyase	EnsemblPlantsGene:Bra006985	EnsemblPlants:Bra006985.1	EnsemblPlants:Bra006985.1-P	InterPro:Fumarase/histidase_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006559
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009698	GO:GO:0009800
GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144
InterPro:IPR024083	InterPro:L-Aspartase-like	UniProt:M4CRZ3	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362
PANTHER:PTHR10362:SF32	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	TIGRFAMs:TIGR01226
UniParc:UPI0002542F1C	:	:	:	:	:

Description

AT3G53260 (E=0.0) PAL2, ATPAL2 | PAL2; phenylalanine ammonia-lyase

Coordinates

chrA09:-:26667582..26670058

Molecular Weight (calculated)

76623.8 Da

IEP (calculated)

6.595

GRAVY (calculated)

-0.187

Length

706 amino acids

Sequence
(BLAST)

001: MLCGGVEKTK VAVAADPLNW GAAAEQMKGS HLDEVKRMVE EYRRPVVNLG GETLTIGQVA AISTVGGGVK GELAEASRAG VKASSDWVME SMGKGTDSYG
101: VTTGFGATSH RRTKNGTALQ TELIRFLNAG IFGDMPHATG IRHASRHARP SQHSSPILQG YSGIRFEILE AITSFLNHNI SPSLPLRGTI TASGDLVPLS
201: YIAGLLTGRP NSKATGPNGE SLTAEEAFKQ AGIASGFFDL QPKEGLALVN GTAVGSGMAS MVLFEANVQS VLAEVLSAIF AEVMSGKPEF TDHLTHRLKH
301: HPGQIEAAAI MEHILDGSSY MKLAQKLHEM DPLQKPKQDR YALRTSPQWL GPQIEVIRHA TKSIEREINS VNDNPLIDVS RNKAIHGGNF QGTPIGVSMD
401: NTRLAIASIG KLMFAQFSEL VNDFYNNGLP SNLTASNNPS LDYGFKGAEI AMASYCSELQ YLANPVTSHV QSAEQHNQDV NSLGLISSRK TSEAVDILKL
501: MSTTFLVAIC QAVDLRHLEE NLRQTVKNTV SQVAKKVLTT GVNGELHPSR FCEKDLLKVV DREQVFTYVD DPCLATYPLM QKLRQVIVDH ALSNGETEKN
601: AVTSIFQKIG AFEEELKMVL PKEVDAAREA YGNGTAAIPN RIKECRSYPL YKFVREELGT KLLTGEKVVS PGEEFDKVFT AMCEGKIIDP LMECLKEWNG
701: APIPIC

Best Arabidopsis Sequence Match ( AT3G53260.1 )
(BLAST)

001: MDQIEAMLCG GGEKTKVAVT TKTLADPLNW GLAADQMKGS HLDEVKKMVE EYRRPVVNLG GETLTIGQVA AISTVGGSVK VELAETSRAG VKASSDWVME
101: SMNKGTDSYG VTTGFGATSH RRTKNGTALQ TELIRFLNAG IFGNTKETCH TLPQSATRAA MLVRVNTLLQ GYSGIRFEIL EAITSLLNHN ISPSLPLRGT
201: ITASGDLVPL SYIAGLLTGR PNSKATGPDG ESLTAKEAFE KAGISTGFFD LQPKEGLALV NGTAVGSGMA SMVLFEANVQ AVLAEVLSAI FAEVMSGKPE
301: FTDHLTHRLK HHPGQIEAAA IMEHILDGSS YMKLAQKVHE MDPLQKPKQD RYALRTSPQW LGPQIEVIRQ ATKSIEREIN SVNDNPLIDV SRNKAIHGGN
401: FQGTPIGVSM DNTRLAIAAI GKLMFAQFSE LVNDFYNNGL PSNLTASSNP SLDYGFKGAE IAMASYCSEL QYLANPVTSH VQSAEQHNQD VNSLGLISSR
501: KTSEAVDILK LMSTTFLVGI CQAVDLRHLE ENLRQTVKNT VSQVAKKVLT TGINGELHPS RFCEKDLLKV VDREQVFTYV DDPCSATYPL MQRLRQVIVD
601: HALSNGETEK NAVTSIFQKI GAFEEELKAV LPKEVEAARA AYGNGTAPIP NRIKECRSYP LYRFVREELG TKLLTGEKVV SPGEEFDKVF TAMCEGKLID
701: PLMDCLKEWN GAPIPIC

Arabidopsis Description

PAL2Phenylalanine ammonia-lyase 2 [Source:UniProtKB/Swiss-Prot;Acc:P45724]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.