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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:
  • cytosol 3
  • vacuole 1
  • peroxisome 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plastid
Any Predictor:cytosol, mitochondrion, peroxisome, plastid, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
MultiLoc:peroxisome
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EER88591
EER93773
EES05455
EES06499
EES07174
EES07175
EES07176
EES07177
EES12521
OQU81984

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37040.1 EER93773 AT2G37040.1 21798944
AT2G37040.1 EES05455 AT2G37040.1 21798944
AT2G37040.1 EES07174 AT2G37040.1 21798944
AT2G37040.1 EES07175 AT2G37040.1 21798944
AT2G37040.1 EES07176 AT2G37040.1 21798944
AT2G37040.1 EES07177 AT2G37040.1 21798944
AT2G37040.1 EES12521 AT2G37040.1 21798944
AT2G37040.1 OQU81984 AT2G37040.1 21798944
AT2G37040.1 EER93773 AT3G10340.1 21798944
AT2G37040.1 EES05455 AT3G10340.1 21798944
AT2G37040.1 EES07174 AT3G10340.1 21798944
AT2G37040.1 EES07175 AT3G10340.1 21798944
AT2G37040.1 EES07176 AT3G10340.1 21798944
AT2G37040.1 EES07177 AT3G10340.1 21798944
AT2G37040.1 EES12521 AT3G10340.1 21798944
AT2G37040.1 OQU81984 AT3G10340.1 21798944
AT3G10340.1 EER88591 AT1G15670.1 21798944
AT3G10340.1 EES06499 AT1G15670.1 21798944
AT3G53260.1 EER93773 AT3G10340.1 21798944
AT3G53260.1 EES05455 AT3G10340.1 21798944
AT3G53260.1 EES07174 AT3G10340.1 21798944
AT3G53260.1 EES07175 AT3G10340.1 21798944
AT3G53260.1 EES07176 AT3G10340.1 21798944
AT3G53260.1 EES07177 AT3G10340.1 21798944
AT3G53260.1 EES12521 AT3G10340.1 21798944
AT3G53260.1 OQU81984 AT3G10340.1 21798944
AT3G53260.1 EER93773 AT3G53260.1 21798944
AT3G53260.1 EES05455 AT3G53260.1 21798944
AT3G53260.1 EES07174 AT3G53260.1 21798944
AT3G53260.1 EES07175 AT3G53260.1 21798944
AT3G53260.1 EES07176 AT3G53260.1 21798944
AT3G53260.1 EES07177 AT3G53260.1 21798944
AT3G53260.1 EES12521 AT3G53260.1 21798944
AT3G53260.1 OQU81984 AT3G53260.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES07177 Sorghum cytosol, peroxisome, plastid 100.0 100.0
EES05455 Sorghum cytosol, peroxisome, plastid 99.86 99.86
Zm00001d051166_P001 Maize extracellular 97.06 96.79
OQU81984 Sorghum peroxisome 89.08 89.08
Os02t0626600-00 Rice plasma membrane 88.94 88.81
EES07175 Sorghum cytosol, peroxisome, plastid 89.08 88.58
Solyc03g036480.1.1 Tomato peroxisome 11.76 82.35
Solyc03g036470.1.1 Tomato mitochondrion 25.21 78.6
CDY18464 Canola peroxisome 46.08 77.78
PGSC0003DMT400080765 Potato peroxisome 47.06 77.24
Solyc03g042560.1.1 Tomato peroxisome 49.44 75.75
KRH34854 Soybean cytosol, endoplasmic reticulum, peroxisome 72.83 75.69
CDX67566 Canola cytosol 51.96 75.56
PGSC0003DMT400055489 Potato mitochondrion 41.32 75.45
EES12521 Sorghum cytosol 74.23 75.39
Solyc10g086180.1.1 Tomato extracellular 74.93 75.25
CDX78161 Canola cytosol 52.24 75.2
CDX73567 Canola cytosol 52.24 75.2
Solyc09g007910.2.1 Tomato extracellular, nucleus 75.77 75.03
PGSC0003DMT400080548 Potato cytosol, peroxisome, plastid 74.65 74.96
Solyc09g007900.2.1 Tomato cytosol, endoplasmic reticulum, peroxisome 75.63 74.9
PGSC0003DMT400055488 Potato cytosol, peroxisome, plastid 75.63 74.79
Solyc09g007920.2.1 Tomato extracellular, nucleus 75.49 74.76
PGSC0003DMT400055531 Potato cytosol, peroxisome, plastid 75.21 74.69
AT3G10340.1 Thale cress peroxisome 73.95 74.68
KRG91925 Soybean cytosol, peroxisome, plastid 74.65 74.34
EES07174 Sorghum cytosol, peroxisome, plastid 73.25 74.29
CDY66761 Canola cytosol, peroxisome, plastid 53.92 74.18
Bra017210.1-P Field mustard cytosol, peroxisome, plastid 74.93 74.1
CDY00922 Canola cytosol 73.25 74.08
Bra029831.1-P Field mustard cytosol 73.11 73.94
Bra003126.1-P Field mustard cytosol 73.11 73.83
CDY08611 Canola cytosol 72.97 73.8
EER93773 Sorghum peroxisome 73.11 73.62
PGSC0003DMT400049886 Potato nucleus, peroxisome, plastid 71.01 73.58
CDX76219 Canola cytosol 53.64 73.37
Solyc09g007890.1.1 Tomato plastid 73.67 73.16
AT3G53260.1 Thale cress cytosol 73.39 73.08
AT2G37040.1 Thale cress cytosol, peroxisome, plastid 74.09 72.97
Bra006985.1-P Field mustard cytosol 71.71 72.52
Bra039777.1-P Field mustard peroxisome 50.7 70.98
Solyc03g071860.2.1 Tomato endoplasmic reticulum 35.99 70.41
Solyc03g078280.1.1 Tomato peroxisome 25.35 70.16
CDX99621 Canola mitochondrion 52.94 69.1
Solyc03g078270.1.1 Tomato endoplasmic reticulum 14.01 68.97
AT5G04230.2 Thale cress peroxisome 66.95 68.48
Bra030322.1-P Field mustard cytosol, peroxisome, plastid 64.57 66.05
Bra005221.1-P Field mustard peroxisome 34.31 66.04
CDY15917 Canola cytosol, peroxisome, plastid 64.43 65.9
CDY13306 Canola peroxisome 19.19 65.24
HORVU2Hr1G062750.1 Barley mitochondrion 16.53 64.13
CDY18463 Canola peroxisome 23.53 63.88
CDX91331 Canola peroxisome 33.89 63.68
CDX74991 Canola peroxisome 33.89 63.68
PGSC0003DMT400055529 Potato cytosol 14.43 61.68
Solyc03g071870.1.1 Tomato peroxisome 14.29 59.3
VIT_11s0016g01640.t01 Wine grape peroxisome 55.04 59.1
Solyc10g011920.1.1 Tomato cytosol 10.08 56.69
Solyc10g011930.1.1 Tomato cytosol 10.08 56.69
GSMUA_Achr9P15990_001 Banana peroxisome 55.74 56.61
Bra028793.1-P Field mustard peroxisome 21.99 53.4
CDY61769 Canola peroxisome 18.91 53.36
VIT_11s0016g01660.t01 Wine grape peroxisome 12.75 52.3
VIT_11s0016g01520.t01 Wine grape peroxisome 63.31 50.5
VIT_11s0016g01510.t01 Wine grape peroxisome 14.71 29.58
Protein Annotations
KEGG:00360+4.3.1.24KEGG:00940+4.3.1.24Gene3D:1.10.274.20Gene3D:1.10.275.10Gene3D:1.20.200.10EntrezGene:8066167
EntrezGene:8066169MapMan:9.2.1.1.1InterPro:Aromatic_LyaseUniProt:C5XXU0EnsemblPlants:EES07176ProteinID:EES07176
ProteinID:EES07176.1ProteinID:EES07177.1InterPro:Fumarase/histidase_NGO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006559GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009058GO:GO:0009698GO:GO:0009800GO:GO:0009987GO:GO:0016829
GO:GO:0016841GO:GO:0019748GO:GO:0045548InterPro:IPR023144InterPro:IPR024083InterPro:L-Aspartase-like
PFAM:PF00221ScanProsite:PS00488PANTHER:PTHR10362PANTHER:PTHR10362:SF31MetaCyc:PWY-1121MetaCyc:PWY-5883
MetaCyc:PWY-6444MetaCyc:PWY-6457InterPro:Phe/His_NH3-lyase_ASInterPro:Phe_NH3-lyaseInterPro:Phe_NH3-lyase_shielding_dom_sfEnsemblPlantsGene:SORBI_3004G220500
SUPFAM:SSF48557TIGRFAMs:TIGR01226UniParc:UPI0001A85F4ARefSeq:XP_002454200.1RefSeq:XP_002454201.1RefSeq:XP_002454202.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr4:-:57075106..57077250
Molecular Weight (calculated)
76828.4 Da
IEP (calculated)
6.406
GRAVY (calculated)
-0.080
Length
714 amino acids
Sequence
(BLAST)
001: MACENGRVAA TNGDGLCMAT PRADPLNWGK AAEELMGSHL DEVKRMVAEY RQPLVKIEGA SLRIAQVAAV AAGAGEARVE LDESARGRVK ASSDWVMNSM
101: MNGTDSYGVT TGFGATSHRR TKEGGALQRE LIRFLNAGAF GTGTDGHVLP AEATRAAMLV RINTLLQGYS GIRFEILEAI VKLLNANVTP CLPLRGTVTA
201: SGDLVPLSYI AGLVTGRENS VAVAPDGTKV NAAEAFKIAG IQGGFFELQP KEGLAMVNGT AVGSGLASTV LFEANVLAIL AEVLSAVFCE VMNGKPEYTD
301: HLTHKLKHHP GQIEAAAIME HILEGSSYMK LAKKLGELDP LMKPKQDRYA LRTSPQWLGP QIEVIRAATK SIEREINSVN DNPLIDVARS KALHGGNFQG
401: TPIGVSMDNT RLAIAAIGKL MFAQFSELVN DYYNNGLPSN LSGGRNPSLD YGFKGAEIAM ASYCSELQFL GNPVTNHVQS AEQHNQDVNS LGLISSRKTA
501: EAIEILKLMS STFLIALCQA VDLRHIEENV KSAVKSCVMT VAKKTLSTNS TGGLHVARFC EKDLLQEIER EAVFAYADDP CSANYPLMKK LRNVLVERAL
601: ANGAAEFDAE TSVFAKVAQF EEELRAALPK AVEAARAAVE NGTAAIPNRI TECRSYPLYR FVRQEVGAVY LTGEKTRSPG EELNKVLVAI NQGKHIDPLL
701: ECLKEWNGEP LPIC
Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
Arabidopsis Description
PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.