CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88591
EER93773
EES05455
EES06499
EES07174
EES07175
EES07176
EES07177
EES12521
OQU81984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	EER93773	AT2G37040.1	21798944
AT2G37040.1	EES05455	AT2G37040.1	21798944
AT2G37040.1	EES07174	AT2G37040.1	21798944
AT2G37040.1	EES07175	AT2G37040.1	21798944
AT2G37040.1	EES07176	AT2G37040.1	21798944
AT2G37040.1	EES07177	AT2G37040.1	21798944
AT2G37040.1	EES12521	AT2G37040.1	21798944
AT2G37040.1	OQU81984	AT2G37040.1	21798944
AT2G37040.1	EER93773	AT3G10340.1	21798944
AT2G37040.1	EES05455	AT3G10340.1	21798944
AT2G37040.1	EES07174	AT3G10340.1	21798944
AT2G37040.1	EES07175	AT3G10340.1	21798944
AT2G37040.1	EES07176	AT3G10340.1	21798944
AT2G37040.1	EES07177	AT3G10340.1	21798944
AT2G37040.1	EES12521	AT3G10340.1	21798944
AT2G37040.1	OQU81984	AT3G10340.1	21798944
AT3G10340.1	EER88591	AT1G15670.1	21798944
AT3G10340.1	EES06499	AT1G15670.1	21798944
AT3G53260.1	EER93773	AT3G10340.1	21798944
AT3G53260.1	EES05455	AT3G10340.1	21798944
AT3G53260.1	EES07174	AT3G10340.1	21798944
AT3G53260.1	EES07175	AT3G10340.1	21798944
AT3G53260.1	EES07176	AT3G10340.1	21798944
AT3G53260.1	EES07177	AT3G10340.1	21798944
AT3G53260.1	EES12521	AT3G10340.1	21798944
AT3G53260.1	OQU81984	AT3G10340.1	21798944
AT3G53260.1	EER93773	AT3G53260.1	21798944
AT3G53260.1	EES05455	AT3G53260.1	21798944
AT3G53260.1	EES07174	AT3G53260.1	21798944
AT3G53260.1	EES07175	AT3G53260.1	21798944
AT3G53260.1	EES07176	AT3G53260.1	21798944
AT3G53260.1	EES07177	AT3G53260.1	21798944
AT3G53260.1	EES12521	AT3G53260.1	21798944
AT3G53260.1	OQU81984	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07177	Sorghum	cytosol, peroxisome, plastid	99.86	99.86
EES07176	Sorghum	cytosol, peroxisome, plastid	99.86	99.86
Zm00001d051166_P001	Maize	extracellular	97.2	96.93
OQU81984	Sorghum	peroxisome	88.94	88.94
Os02t0626600-00	Rice	plasma membrane	88.94	88.81
EES07175	Sorghum	cytosol, peroxisome, plastid	88.94	88.44
Solyc03g036480.1.1	Tomato	peroxisome	11.76	82.35
Solyc03g036470.1.1	Tomato	mitochondrion	25.21	78.6
CDY18464	Canola	peroxisome	46.08	77.78
PGSC0003DMT400080765	Potato	peroxisome	47.06	77.24
Solyc03g042560.1.1	Tomato	peroxisome	49.44	75.75
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	72.83	75.69
CDX67566	Canola	cytosol	51.96	75.56
PGSC0003DMT400055489	Potato	mitochondrion	41.32	75.45
EES12521	Sorghum	cytosol	74.23	75.39
Solyc10g086180.1.1	Tomato	extracellular	74.93	75.25
CDX78161	Canola	cytosol	52.24	75.2
CDX73567	Canola	cytosol	52.24	75.2
Solyc09g007910.2.1	Tomato	extracellular, nucleus	75.77	75.03
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	74.65	74.96
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	75.63	74.9
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	75.63	74.79
Solyc09g007920.2.1	Tomato	extracellular, nucleus	75.49	74.76
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	75.21	74.69
AT3G10340.1	Thale cress	peroxisome	73.95	74.68
KRG91925	Soybean	cytosol, peroxisome, plastid	74.65	74.34
EES07174	Sorghum	cytosol, peroxisome, plastid	73.25	74.29
CDY66761	Canola	cytosol, peroxisome, plastid	53.92	74.18
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	74.93	74.1
CDY00922	Canola	cytosol	73.25	74.08
Bra029831.1-P	Field mustard	cytosol	73.11	73.94
Bra003126.1-P	Field mustard	cytosol	73.11	73.83
CDY08611	Canola	cytosol	72.97	73.8
EER93773	Sorghum	peroxisome	73.11	73.62
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	71.01	73.58
CDX76219	Canola	cytosol	53.64	73.37
Solyc09g007890.1.1	Tomato	plastid	73.67	73.16
AT3G53260.1	Thale cress	cytosol	73.39	73.08
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	74.09	72.97
Bra006985.1-P	Field mustard	cytosol	71.71	72.52
Bra039777.1-P	Field mustard	peroxisome	50.7	70.98
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	35.99	70.41
Solyc03g078280.1.1	Tomato	peroxisome	25.35	70.16
CDX99621	Canola	mitochondrion	52.94	69.1
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	14.01	68.97
AT5G04230.2	Thale cress	peroxisome	66.95	68.48
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	64.57	66.05
Bra005221.1-P	Field mustard	peroxisome	34.31	66.04
CDY15917	Canola	cytosol, peroxisome, plastid	64.43	65.9
CDY13306	Canola	peroxisome	19.19	65.24
HORVU2Hr1G062750.1	Barley	mitochondrion	16.53	64.13
CDY18463	Canola	peroxisome	23.53	63.88
CDX91331	Canola	peroxisome	33.89	63.68
CDX74991	Canola	peroxisome	33.89	63.68
PGSC0003DMT400055529	Potato	cytosol	14.43	61.68
Solyc03g071870.1.1	Tomato	peroxisome	14.29	59.3
VIT_11s0016g01640.t01	Wine grape	peroxisome	55.04	59.1
Solyc10g011920.1.1	Tomato	cytosol	10.08	56.69
Solyc10g011930.1.1	Tomato	cytosol	10.08	56.69
GSMUA_Achr9P15990_001	Banana	peroxisome	55.74	56.61
Bra028793.1-P	Field mustard	peroxisome	21.99	53.4
CDY61769	Canola	peroxisome	18.91	53.36
VIT_11s0016g01660.t01	Wine grape	peroxisome	12.75	52.3
VIT_11s0016g01520.t01	Wine grape	peroxisome	63.31	50.5
VIT_11s0016g01510.t01	Wine grape	peroxisome	14.57	29.3

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:8066170
MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase	UniProt:C5XXU3	EnsemblPlants:EES05455	ProteinID:EES05455	ProteinID:EES05455.1
InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748
GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	PFAM:PF00221	ScanProsite:PS00488
PANTHER:PTHR10362	PANTHER:PTHR10362:SF31	MetaCyc:PWY-1121	MetaCyc:PWY-5883	MetaCyc:PWY-6444	MetaCyc:PWY-6457
InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	EnsemblPlantsGene:SORBI_3004G220700	SUPFAM:SSF48557	unigene:Sbi.11817
TIGRFAMs:TIGR01226	UniParc:UPI0001A8542B	RefSeq:XP_002452479.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:57099422..57101566

Molecular Weight (calculated)

76814.3 Da

IEP (calculated)

6.406

GRAVY (calculated)

-0.080

Length

714 amino acids

Sequence
(BLAST)

001: MACDNGRVAA TNGDGLCMAT PRADPLNWGK AAEELMGSHL DEVKRMVAEY RQPLVKIEGA SLRIAQVAAV AAGAGEARVE LDESARGRVK ASSDWVMNSM
101: MNGTDSYGVT TGFGATSHRR TKEGGALQRE LIRFLNAGAF GTGTDGHVLP AEATRAAMLV RINTLLQGYS GIRFEILEAI VKLLNANVTP CLPLRGTVTA
201: SGDLVPLSYI AGLVTGRENS VAVAPDGTKV NAAEAFKIAG IQGGFFELQP KEGLAMVNGT AVGSGLASTV LFEANVLAIL AEVLSAVFCE VMNGKPEYTD
301: HLTHKLKHHP GQIEAAAIME HILEGSSYMK LAKKLGELDP LMKPKQDRYA LRTSPQWLGP QIEVIRAATK SIEREINSVN DNPLIDVARS KALHGGNFQG
401: TPIGVSMDNT RLAIAAIGKL MFAQFSELVN DYYNNGLPSN LSGGRNPSLD YGFKGAEIAM ASYCSELQFL GNPVTNHVQS AEQHNQDVNS LGLISSRKTA
501: EAIEILKLMS STFLIALCQA VDLRHIEENV KSAVKSCVMT VAKKTLSTNS TGGLHVARFC EKDLLQEIER EAVFAYADDP CSANYPLMKK LRNVLVERAL
601: ANGAAEFDAE TSVFAKVAQF EEELRAALPK AVEAARAAVE NGTAAIPNRI TECRSYPLYR FVRQEVGAVY LTGEKTRSPG EELNKVLVAI NQGKHIDPLL
701: ECLKEWNGEP LPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.