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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • cytosol 2
  • plastid 1
  • peroxisome 2
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:cytoskeleton, cytosol, mitochondrion, peroxisome, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:peroxisome
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003126.1-P
Bra006985.1-P
Bra008685.1-P
Bra023527.1-P
Bra029831.1-P
Bra039777.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G53260.1 Bra029831.1-P AT3G10340.1 21798944
AT3G53260.1 Bra003126.1-P AT3G53260.1 21798944
AT3G53260.1 Bra006985.1-P AT3G53260.1 21798944
AT3G53260.1 Bra039777.1-P AT3G53260.1 21798944
AT3G53260.1 Bra008685.1-P AT5G15600.1 21798944
AT3G53260.1 Bra023527.1-P AT5G15600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY66761 Canola cytosol, peroxisome, plastid 92.94 91.33
CDX76219 Canola cytosol 93.14 91.0
Solyc03g036480.1.1 Tomato peroxisome 16.47 82.35
Solyc03g078270.1.1 Tomato endoplasmic reticulum 20.98 73.79
Solyc03g036470.1.1 Tomato mitochondrion 32.35 72.05
HORVU2Hr1G089540.1 Barley peroxisome 66.08 71.86
TraesCS1A01G094900.1 Wheat cytosol, peroxisome, plastid 66.67 68.27
Bra006985.1-P Field mustard cytosol 89.8 64.87
Bra003126.1-P Field mustard cytosol 87.84 63.37
TraesCS5B01G468400.1 Wheat peroxisome 67.84 62.68
Zm00001d029015_P001 Maize peroxisome 48.82 62.56
AT3G53260.1 Thale cress cytosol 87.45 62.2
Bra017210.1-P Field mustard cytosol, peroxisome, plastid 85.49 60.39
GSMUA_Achr8P18960_001 Banana cytosol, peroxisome, plastid 70.59 59.9
Solyc03g071870.1.1 Tomato peroxisome 20.2 59.88
Solyc10g011930.1.1 Tomato cytosol 14.71 59.06
TraesCS2B01G398100.1 Wheat cytosol, peroxisome, plastid 60.0 58.85
Solyc10g011920.1.1 Tomato cytosol 14.51 58.27
GSMUA_Achr1P09070_001 Banana peroxisome 73.33 57.19
GSMUA_Achr11P... Banana cytosol, peroxisome, plastid 73.33 57.1
GSMUA_Achr5P03950_001 Banana cytosol, peroxisome, plastid 72.75 56.99
GSMUA_Achr5P18560_001 Banana cytosol, peroxisome, plastid 72.75 56.9
Zm00001d027249_P001 Maize peroxisome 24.51 56.05
GSMUA_Achr2P00240_001 Banana peroxisome 71.76 56.05
KRH34854 Soybean cytosol, endoplasmic reticulum, peroxisome 74.12 55.02
Solyc09g007910.2.1 Tomato extracellular, nucleus 77.45 54.78
Solyc09g007900.2.1 Tomato cytosol, endoplasmic reticulum, peroxisome 77.25 54.65
Solyc09g007920.2.1 Tomato extracellular, nucleus 77.25 54.65
KRG91925 Soybean cytosol, peroxisome, plastid 76.67 54.53
Solyc09g007890.1.1 Tomato plastid 76.86 54.52
PGSC0003DMT400080548 Potato cytosol, peroxisome, plastid 75.69 54.29
Bra029831.1-P Field mustard cytosol 75.1 54.25
Zm00001d051164_P001 Maize peroxisome 16.67 54.14
GSMUA_Achr11P... Banana peroxisome 68.24 54.12
PGSC0003DMT400055488 Potato cytosol, peroxisome, plastid 76.47 54.02
Solyc10g086180.1.1 Tomato extracellular 75.1 53.87
PGSC0003DMT400055531 Potato cytosol, peroxisome, plastid 75.49 53.55
Zm00001d020933_P001 Maize mitochondrion 21.96 53.08
TraesCS1D01G039300.1 Wheat mitochondrion 54.71 52.94
PGSC0003DMT400049886 Potato nucleus, peroxisome, plastid 70.59 52.25
Zm00001d053619_P001 Maize mitochondrion 43.33 52.25
TraesCS2D01G377600.1 Wheat plastid 72.55 52.19
TraesCS2D01G377500.1 Wheat cytosol, peroxisome, plastid 72.55 51.89
Os04t0518400-01 Rice extracellular, plasma membrane 72.35 51.68
TraesCS2A01G381100.1 Wheat plastid 72.16 51.61
TraesCS2B01G398000.2 Wheat plastid 72.16 51.61
TraesCS2D01G377200.1 Wheat cytosol, peroxisome, plastid 72.16 51.61
HORVU1Hr1G022060.1 Barley cytosol, peroxisome, plastid 71.37 51.49
HORVU2Hr1G038120.1 Barley cytosol, peroxisome, plastid 71.37 51.49
TraesCS1B01G048400.2 Wheat cytosol, peroxisome, plastid 71.37 51.49
TraesCS2D01G204700.1 Wheat peroxisome 71.37 51.49
TraesCS2D01G218700.1 Wheat peroxisome 71.37 51.49
TraesCS2B01G398400.1 Wheat cytosol, peroxisome, plastid 71.96 51.47
TraesCS2B01G224300.1 Wheat cytosol, peroxisome, plastid 71.18 51.42
TraesCS1D01G039400.1 Wheat golgi 71.18 51.34
TraesCS2A01G196700.1 Wheat peroxisome 71.18 51.34
TraesCS2B01G224000.1 Wheat peroxisome 71.18 51.34
TraesCS5B01G468300.1 Wheat cytosol, peroxisome, plastid 71.18 51.34
TraesCS2A01G380800.1 Wheat cytosol, peroxisome, plastid 71.76 51.33
TraesCS2B01G398200.1 Wheat cytosol, peroxisome, plastid 71.76 51.33
TraesCS1D01G103500.1 Wheat cytosol, peroxisome, plastid 71.18 51.27
TraesCS1A01G037800.1 Wheat cytosol, peroxisome, plastid 71.76 51.26
Os02t0626400-01 Rice mitochondrion, plasma membrane 72.16 51.25
TraesCS2A01G212900.1 Wheat cytosol, peroxisome, plastid 70.98 51.2
TraesCS2D01G204400.1 Wheat peroxisome 67.06 51.2
TraesCS1B01G048300.1 Wheat cytosol, peroxisome, plastid 71.57 51.19
TraesCS2A01G380900.1 Wheat cytosol, peroxisome, plastid 71.57 51.19
TraesCS2A01G381000.1 Wheat plastid 71.57 51.19
TraesCS2D01G377400.1 Wheat cytosol, peroxisome, plastid 71.57 51.19
TraesCS1B01G122800.1 Wheat cytosol, peroxisome, plastid 70.98 51.13
TraesCS1B01G048100.1 Wheat cytosol, peroxisome, plastid 71.57 51.12
TraesCS1B01G048200.1 Wheat cytosol, peroxisome, plastid 71.57 51.12
TraesCS1D01G039500.1 Wheat cytosol, peroxisome, plastid 71.57 51.12
TraesCS6B01G258500.1 Wheat extracellular, unclear 71.57 51.12
TraesCS1A01G037700.1 Wheat cytosol, peroxisome, plastid 70.78 51.06
TraesCS4A01G401300.1 Wheat cytosol, peroxisome, plastid 71.37 51.05
HORVU0Hr1G016330.1 Barley cytosol, peroxisome, plastid 71.57 51.05
Bra030322.1-P Field mustard cytosol, peroxisome, plastid 69.8 51.0
Zm00001d017276_P001 Maize peroxisome 70.39 50.99
TraesCS6B01G258600.1 Wheat cytosol, peroxisome, plasma membrane 71.18 50.98
TraesCS6D01G212500.1 Wheat peroxisome 71.18 50.98
Os02t0627100-01 Rice plasma membrane 71.18 50.91
TraesCS1B01G048500.1 Wheat cytosol, peroxisome, plastid 71.18 50.84
TraesCS6A01G222800.1 Wheat cytosol, peroxisome, plastid 71.18 50.84
TraesCS6D01G212400.1 Wheat cytosol, peroxisome, plastid 71.18 50.84
HORVU6Hr1G058840.1 Barley cytosol, peroxisome, plasma membrane 70.78 50.7
EES05455 Sorghum cytosol, peroxisome, plastid 70.98 50.7
EES07176 Sorghum cytosol, peroxisome, plastid 70.98 50.7
EES07177 Sorghum cytosol, peroxisome, plastid 70.98 50.7
OQU81984 Sorghum peroxisome 70.98 50.7
Zm00001d003015_P001 Maize peroxisome 70.98 50.63
TraesCS6A01G222700.1 Wheat cytosol, peroxisome, plasma membrane 70.59 50.56
Os05t0427400-00 Rice cytosol, peroxisome, plastid 70.98 50.56
Zm00001d051166_P001 Maize extracellular 70.98 50.56
Zm00001d017279_P001 Maize cytosol, peroxisome, plastid 70.59 50.35
Zm00001d017275_P001 Maize extracellular 70.98 50.35
Zm00001d051163_P002 Maize peroxisome 70.59 50.14
EES07175 Sorghum cytosol, peroxisome, plastid 70.39 50.0
TraesCS2B01G020100.1 Wheat peroxisome 65.88 49.34
TraesCS2A01G196400.1 Wheat mitochondrion, plastid 64.51 49.25
HORVU2Hr1G089440.9 Barley plasma membrane 72.55 48.24
Os02t0626100-01 Rice extracellular, plasma membrane 65.88 47.93
Os02t0626600-00 Rice plasma membrane 67.06 47.83
EES12521 Sorghum cytosol 65.69 47.65
Solyc03g042560.1.1 Tomato peroxisome 43.53 47.64
Zm00001d017274_P001 Maize plasma membrane 65.49 47.51
TraesCS6A01G222900.1 Wheat extracellular, golgi, unclear 65.49 47.44
EES07174 Sorghum cytosol, peroxisome, plastid 65.29 47.3
TraesCS6B01G258400.2 Wheat cytosol, peroxisome, plastid 65.29 47.3
TraesCS6D01G212200.1 Wheat extracellular, golgi, unclear 65.29 47.3
HORVU2Hr1G062750.1 Barley mitochondrion 17.06 47.28
Os04t0518100-01 Rice plasma membrane 65.49 47.24
Zm00001d051161_P003 Maize plastid 65.1 47.23
Zm00001d033286_P001 Maize peroxisome 64.12 46.85
PGSC0003DMT400080765 Potato peroxisome 39.8 46.67
Os12t0520200-01 Rice plasma membrane 62.16 46.62
TraesCS3D01G016300.1 Wheat peroxisome 62.55 46.3
TraesCS3A01G029200.1 Wheat peroxisome 62.35 46.15
TraesCS3B01G027800.1 Wheat mitochondrion 49.22 46.14
TraesCS3B01G053900.1 Wheat peroxisome 62.16 46.01
HORVU3Hr1G005330.2 Barley cytosol, peroxisome, plasma membrane 61.96 45.8
HORVU2Hr1G038140.1 Barley mitochondrion, plastid 64.9 45.78
EER93773 Sorghum peroxisome 63.14 45.42
TraesCS3D01G016500.1 Wheat peroxisome 60.2 44.56
TraesCSU01G030700.1 Wheat peroxisome 59.02 44.33
Zm00001d003016_P001 Maize plastid 66.27 42.84
HORVU6Hr1G058820.2 Barley mitochondrion 56.86 40.9
PGSC0003DMT400055489 Potato mitochondrion 30.59 39.9
VIT_11s0016g01640.t01 Wine grape peroxisome 50.2 38.5
GSMUA_Achr9P15990_001 Banana peroxisome 52.94 38.41
Bra005221.1-P Field mustard peroxisome 27.45 37.74
Solyc03g071860.2.1 Tomato endoplasmic reticulum 26.86 37.53
Bra028793.1-P Field mustard peroxisome 20.0 34.69
VIT_11s0016g01520.t01 Wine grape peroxisome 60.78 34.64
TraesCS2A01G212600.1 Wheat cytosol 17.06 32.83
TraesCS2B01G398300.2 Wheat peroxisome 22.55 31.25
Solyc03g078280.1.1 Tomato peroxisome 12.75 25.19
VIT_11s0016g01510.t01 Wine grape peroxisome 15.1 21.69
Os12t0461300-00 Rice plastid 9.02 18.18
PGSC0003DMT400055529 Potato cytosol 5.29 16.17
Os08t0308300-00 Rice plastid 3.14 8.51
VIT_11s0016g01660.t01 Wine grape peroxisome 0.39 1.15
Protein Annotations
KEGG:00360+4.3.1.24KEGG:00940+4.3.1.24Gene3D:1.10.275.10Gene3D:1.20.200.10MapMan:9.2.1.1.1InterPro:Aromatic_Lyase
EnsemblPlantsGene:Bra039777EnsemblPlants:Bra039777.1EnsemblPlants:Bra039777.1-PInterPro:Fumarase/histidase_NGO:GO:0003674GO:GO:0003824
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006559GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009698GO:GO:0009800GO:GO:0009987
GO:GO:0016829GO:GO:0016841GO:GO:0019748GO:GO:0045548InterPro:IPR024083InterPro:L-Aspartase-like
UniProt:M4FFA5PFAM:PF00221ScanProsite:PS00488PANTHER:PTHR10362PANTHER:PTHR10362:SF30InterPro:Phe/His_NH3-lyase_AS
InterPro:Phe_NH3-lyaseSUPFAM:SSF48557TIGRFAMs:TIGR01226UniParc:UPI0002545450::
Description
AT3G53260 (E=4e-169) PAL2, ATPAL2 | PAL2; phenylalanine ammonia-lyase
Coordinates
chrA04:+:3946512..3949566
Molecular Weight (calculated)
54870.5 Da
IEP (calculated)
6.630
GRAVY (calculated)
-0.238
Length
510 amino acids
Sequence
(BLAST)
001: MDQINGSVHQ NGKTEAMLLC GGLEKTKVTV AADPLNWGAA AEQMKGSHLD EVKRMVEDYR KPVVNLGGET LTIGQVAAIS NVGGGGKVEL AEASRAGVKA
101: SSDWVMESMG KGTDSYGVTT GFGATSHRRT KNGTALQTEL IRRHVTRYRN PPREPPCSSE STHSSNILQG YSGIRFEILE AITSFLNHNI SPSLPLRGTI
201: TASGDLVPLS YIAGLLTGRP NSKATGPNGE SLTAEEAFKK AGITSGFFDL QPKEGLALVN GTAVGSGMAS MVLFEANVQS VLAEVLSAIF AEVMSGKPEF
301: TDHLTHRLKH HPGQIEAAAI MEHILDGSSY MKLAAKLHEM DPLQKPKQDR YALRTSPQWL GPQIEVIRHA TKSIEREINS VNDNPLIDVS RNKAIHGGNF
401: QGTPIGVSMD NTRLAVAAIG KLMFAQFSEL VNDFYNNGLP SNLTASNNPS LDYGFKGAEI AMASYCSELQ YLANPDKQID KVFTAMCEGK IIDPLMDCLK
501: EWNGAPIPIC
Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
Arabidopsis Description
PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.