Skip to main content
crop-pal logo
Rice
Search for another protein from :
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 1
  • peroxisome 2
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:peroxisome
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0208700-00
Os02t0626100-01
Os02t0626400-01
Os02t0626600-00
Os02t0627100-01
Os04t0518100-01
Os04t0518400-01
Os05t0427400-00
Os06t0594400-02
Os08t0308300-00
Os12t0461300-00
Os12t0520200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37040.1 Os02t0626100-01 AT2G37040.1 21798944
AT2G37040.1 Os02t0626400-01 AT2G37040.1 21798944
AT2G37040.1 Os02t0626600-00 AT2G37040.1 21798944
AT2G37040.1 Os02t0627100-01 AT2G37040.1 21798944
AT2G37040.1 Os04t0518100-01 AT2G37040.1 21798944
AT2G37040.1 Os04t0518400-01 AT2G37040.1 21798944
AT2G37040.1 Os05t0427400-00 AT2G37040.1 21798944
AT2G37040.1 Os08t0308300-00 AT2G37040.1 21798944
AT2G37040.1 Os12t0461300-00 AT2G37040.1 21798944
AT2G37040.1 Os12t0520200-01 AT2G37040.1 21798944
AT2G37040.1 Os02t0626100-01 AT3G10340.1 21798944
AT2G37040.1 Os02t0626400-01 AT3G10340.1 21798944
AT2G37040.1 Os02t0626600-00 AT3G10340.1 21798944
AT2G37040.1 Os02t0627100-01 AT3G10340.1 21798944
AT2G37040.1 Os04t0518100-01 AT3G10340.1 21798944
AT2G37040.1 Os04t0518400-01 AT3G10340.1 21798944
AT2G37040.1 Os05t0427400-00 AT3G10340.1 21798944
AT2G37040.1 Os08t0308300-00 AT3G10340.1 21798944
AT2G37040.1 Os12t0461300-00 AT3G10340.1 21798944
AT2G37040.1 Os12t0520200-01 AT3G10340.1 21798944
AT3G10340.1 Os02t0208700-00 AT1G15670.1 21798944
AT3G10340.1 Os06t0594400-02 AT1G15670.1 21798944
AT3G53260.1 Os02t0626100-01 AT3G10340.1 21798944
AT3G53260.1 Os02t0626400-01 AT3G10340.1 21798944
AT3G53260.1 Os02t0626600-00 AT3G10340.1 21798944
AT3G53260.1 Os02t0627100-01 AT3G10340.1 21798944
AT3G53260.1 Os04t0518100-01 AT3G10340.1 21798944
AT3G53260.1 Os04t0518400-01 AT3G10340.1 21798944
AT3G53260.1 Os05t0427400-00 AT3G10340.1 21798944
AT3G53260.1 Os08t0308300-00 AT3G10340.1 21798944
AT3G53260.1 Os12t0461300-00 AT3G10340.1 21798944
AT3G53260.1 Os12t0520200-01 AT3G10340.1 21798944
AT3G53260.1 Os02t0626100-01 AT3G53260.1 21798944
AT3G53260.1 Os02t0626400-01 AT3G53260.1 21798944
AT3G53260.1 Os02t0626600-00 AT3G53260.1 21798944
AT3G53260.1 Os02t0627100-01 AT3G53260.1 21798944
AT3G53260.1 Os04t0518100-01 AT3G53260.1 21798944
AT3G53260.1 Os04t0518400-01 AT3G53260.1 21798944
AT3G53260.1 Os05t0427400-00 AT3G53260.1 21798944
AT3G53260.1 Os08t0308300-00 AT3G53260.1 21798944
AT3G53260.1 Os12t0461300-00 AT3G53260.1 21798944
AT3G53260.1 Os12t0520200-01 AT3G53260.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d033286_P001 Maize peroxisome 90.74 88.4
EER93773 Sorghum peroxisome 89.41 85.75
Os02t0626400-01 Rice mitochondrion, plasma membrane 78.38 74.23
Os04t0518400-01 Rice extracellular, plasma membrane 76.62 72.97
Solyc03g036480.1.1 Tomato peroxisome 10.88 72.55
Os05t0427400-00 Rice cytosol, peroxisome, plastid 76.18 72.35
Os02t0627100-01 Rice plasma membrane 75.59 72.09
Os02t0626600-00 Rice plasma membrane 71.62 68.11
Solyc03g036470.1.1 Tomato mitochondrion 22.79 67.69
Os02t0626100-01 Rice extracellular, plasma membrane 69.41 67.33
CDY18464 Canola peroxisome 41.76 67.14
PGSC0003DMT400080765 Potato peroxisome 42.5 66.44
Os04t0518100-01 Rice plasma membrane 68.82 66.2
CDX67566 Canola cytosol 47.79 66.19
Solyc03g042560.1.1 Tomato peroxisome 45.15 65.88
PGSC0003DMT400055489 Potato mitochondrion 37.79 65.73
CDX78161 Canola cytosol 47.65 65.32
CDX73567 Canola cytosol 47.5 65.12
PGSC0003DMT400080548 Potato cytosol, peroxisome, plastid 67.5 64.56
Solyc10g086180.1.1 Tomato extracellular 67.35 64.42
CDY66761 Canola cytosol, peroxisome, plastid 49.12 64.35
Solyc03g078280.1.1 Tomato peroxisome 24.41 64.34
Solyc09g007920.2.1 Tomato extracellular, nucleus 68.09 64.22
AT3G10340.1 Thale cress peroxisome 66.76 64.22
KRH34854 Soybean cytosol, endoplasmic reticulum, peroxisome 64.85 64.19
Solyc09g007910.2.1 Tomato extracellular, nucleus 67.94 64.08
Solyc09g007900.2.1 Tomato cytosol, endoplasmic reticulum, peroxisome 67.94 64.08
Bra003126.1-P Field mustard cytosol 66.62 64.07
PGSC0003DMT400055488 Potato cytosol, peroxisome, plastid 67.79 63.85
PGSC0003DMT400055531 Potato cytosol, peroxisome, plastid 67.5 63.84
CDX76219 Canola cytosol 48.97 63.79
CDY00922 Canola cytosol 66.18 63.74
PGSC0003DMT400049886 Potato nucleus, peroxisome, plastid 64.56 63.72
Bra017210.1-P Field mustard cytosol, peroxisome, plastid 67.5 63.57
Bra029831.1-P Field mustard cytosol 65.88 63.46
CDY08611 Canola cytosol 65.74 63.31
KRG91925 Soybean cytosol, peroxisome, plastid 66.62 63.18
AT2G37040.1 Thale cress cytosol, peroxisome, plastid 67.35 63.17
CDX99621 Canola mitochondrion 50.74 63.07
AT3G53260.1 Thale cress cytosol 66.47 63.04
Solyc09g007890.1.1 Tomato plastid 66.18 62.59
Bra039777.1-P Field mustard peroxisome 46.62 62.16
Bra006985.1-P Field mustard cytosol 64.26 61.9
Solyc03g071860.2.1 Tomato endoplasmic reticulum 32.94 61.37
AT5G04230.2 Thale cress peroxisome 62.79 61.17
CDY15917 Canola cytosol, peroxisome, plastid 61.03 59.46
Bra030322.1-P Field mustard cytosol, peroxisome, plastid 61.03 59.46
Solyc03g078270.1.1 Tomato endoplasmic reticulum 12.65 59.31
Bra005221.1-P Field mustard peroxisome 28.97 53.1
CDY18463 Canola peroxisome 20.44 52.85
CDX91331 Canola peroxisome 28.82 51.58
VIT_11s0016g01640.t01 Wine grape peroxisome 50.44 51.58
CDX74991 Canola peroxisome 28.82 51.58
PGSC0003DMT400055529 Potato cytosol 12.65 51.5
CDY13306 Canola peroxisome 15.88 51.43
GSMUA_Achr9P15990_001 Banana peroxisome 52.35 50.64
Solyc03g071870.1.1 Tomato peroxisome 12.65 50.0
Solyc10g011930.1.1 Tomato cytosol 8.82 47.24
Solyc10g011920.1.1 Tomato cytosol 8.53 45.67
CDY61769 Canola peroxisome 16.47 44.27
Bra028793.1-P Field mustard peroxisome 19.12 44.22
VIT_11s0016g01520.t01 Wine grape peroxisome 57.94 44.02
Os12t0461300-00 Rice plastid 15.59 41.9
Os08t0308300-00 Rice plastid 11.47 41.49
VIT_11s0016g01660.t01 Wine grape peroxisome 10.0 39.08
VIT_11s0016g01510.t01 Wine grape peroxisome 12.35 23.66
Protein Annotations
KEGG:00360+4.3.1.24KEGG:00940+4.3.1.24Gene3D:1.10.274.20Gene3D:1.10.275.10Gene3D:1.20.200.10MapMan:9.2.1.1.1
UniProt:A0A0P0YAL3InterPro:Aromatic_LyaseProteinID:BAT17396.1InterPro:Fumarase/histidase_NGO:GO:0003674GO:GO:0003824
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006559GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009698GO:GO:0009800GO:GO:0009987
GO:GO:0016829GO:GO:0016841GO:GO:0019748GO:GO:0045548InterPro:IPR023144InterPro:IPR024083
InterPro:L-Aspartase-likeEnsemblPlantsGene:Os12g0520200EnsemblPlants:Os12t0520200-01PFAM:PF00221ScanProsite:PS00488PANTHER:PTHR10362
PANTHER:PTHR10362:SF20InterPro:Phe/His_NH3-lyase_ASInterPro:Phe_NH3-lyaseInterPro:Phe_NH3-lyase_shielding_dom_sfSUPFAM:SSF48557TIGRFAMs:TIGR01226
UniParc:UPI0001C7A564SEG:seg::::
Description
Phenylalanine ammonia-lyase 03, Tyrosine Aminomutase 1Similar to phenylalanine ammonia-lyase. (Os12t0520200-01)
Coordinates
chr12:+:20292893..20295400
Molecular Weight (calculated)
73605.4 Da
IEP (calculated)
6.141
GRAVY (calculated)
-0.027
Length
680 amino acids
Sequence
(BLAST)
001: MECETGLVDR PLNGDPLYWG KAAEGLAGSH LDEVKRMVVE YRAPLVKIDG AMLSVAKVAA VAGEAARVQV VLDESARPRL EASREWVFDS TMNGTDTYGV
101: TTGFGGAAHR RTKEFAALQK ELIRRSDGYT LPTEVTRAAM LVRINTLTQG YSGIRFEILE AIAKLLNANV TPCLPLRGTI TASGDLVPLS YIAGLITGRQ
201: NSAAVAPDGS KVDAAEAFRI AGIEHGFFAL QPKEGLAIVN GTAVGSGLAA IVLFEANVLA VLAEVLSAVY CEVMAGNPEY TDHLIHALKH HPGQIEAAAI
301: MEHILEGSSY MRLAKEQGEL DRLTKLRQDR YAIRTAPQWL GPQVEVIRFA TKSIEREINS VNDNPVIDVA RRKALHGGNF QGTPIGVSMD NTRLAIAAIG
401: RLMFSQFSEL ASSFYSNGLP SNLSGGRNPS LDYGFNGAEV AMASYCSELQ FLANPVTNHV QTAEQHNQSV NSLGLISSRM TAEAVTILKL MSSTFLIALC
501: QAVDLRQLEE SIKAAVNKCV TNVAKKSLAM DDDDLLALLG AAIDRVAVFT YAEDPCRSSL PLIQKLRAVL MDHALANGDN QLAKVAEFEQ QLRAVLHDEV
601: EAARAAVESG TAPNRITQCR SYPLYRFVRK ELGAEYLTGE KTRSPGEEVD KVVIAMNQHK HINPLLECLS EWKGAPLPLN
Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
Arabidopsis Description
PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.