Factsheet for PGSC0003DMT400080548

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006583
PGSC0003DMT400006584
PGSC0003DMT400042650
PGSC0003DMT400042651
PGSC0003DMT400042652
PGSC0003DMT400049886
PGSC0003DMT400055488
PGSC0003DMT400055489
PGSC0003DMT400055529
PGSC0003DMT400055531
PGSC0003DMT400080548
PGSC0003DMT400080765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	PGSC0003DMT400049886	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400055488	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400055489	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400055529	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400055531	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400080548	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400080765	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400049886	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400055488	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400055489	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400055529	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400055531	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400080548	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400080765	AT3G10340.1	21798944
AT3G10340.1	PGSC0003DMT400006583	AT1G15670.1	21798944
AT3G10340.1	PGSC0003DMT400006584	AT1G15670.1	21798944
AT3G10340.1	PGSC0003DMT400042650	AT1G15670.1	21798944
AT3G10340.1	PGSC0003DMT400042651	AT1G15670.1	21798944
AT3G10340.1	PGSC0003DMT400042652	AT1G15670.1	21798944
AT3G53260.1	PGSC0003DMT400049886	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400055488	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400055489	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400055529	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400055531	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400080548	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400080765	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400049886	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400055488	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400055489	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400055529	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400055531	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400080548	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400080765	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086180.1.1	Tomato	extracellular	98.45	98.45
PGSC0003DMT400080765	Potato	peroxisome	55.56	90.8
PGSC0003DMT400055489	Potato	mitochondrion	49.37	89.77
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	90.01	88.64
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	89.03	88.04
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	84.67	87.37
CDY18464	Canola	peroxisome	50.21	84.4
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	81.29	84.13
PGSC0003DMT400055529	Potato	cytosol	19.69	83.83
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	82.84	83.31
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	84.11	82.71
GSMUA_Achr5P03950_001	Banana	cytosol, peroxisome, plastid	74.96	81.87
KRG91925	Soybean	cytosol, peroxisome, plastid	82.56	81.87
Bra003126.1-P	Field mustard	cytosol	80.87	81.33
GSMUA_Achr1P09070_001	Banana	peroxisome	74.68	81.19
AT3G10340.1	Thale cress	peroxisome	80.59	81.05
GSMUA_Achr8P18960_001	Banana	cytosol, peroxisome, plastid	68.21	80.7
CDX78161	Canola	cytosol	56.26	80.65
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	81.58	80.33
CDX67566	Canola	cytosol	55.41	80.24
CDX73567	Canola	cytosol	55.98	80.24
CDY66761	Canola	cytosol, peroxisome, plastid	58.51	80.15
GSMUA_Achr2P00240_001	Banana	peroxisome	73.56	80.09
AT3G53260.1	Thale cress	cytosol	80.59	79.92
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	73.56	79.85
Bra006985.1-P	Field mustard	cytosol	79.04	79.6
Bra029831.1-P	Field mustard	cytosol	79.04	79.6
CDY08611	Canola	cytosol	79.04	79.6
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	81.01	79.45
GSMUA_Achr5P18560_001	Banana	cytosol, peroxisome, plastid	72.86	79.45
CDY00922	Canola	cytosol	78.76	79.32
CDX76219	Canola	cytosol	58.09	79.12
GSMUA_Achr11P...	Banana	peroxisome	70.04	77.45
TraesCS2B01G398100.1	Wheat	cytosol, peroxisome, plastid	56.4	77.12
TraesCS2D01G204400.1	Wheat	peroxisome	72.43	77.1
TraesCS1D01G039300.1	Wheat	mitochondrion	56.96	76.85
Bra005221.1-P	Field mustard	peroxisome	39.94	76.55
Zm00001d003015_P001	Maize	peroxisome	76.37	75.94
Bra039777.1-P	Field mustard	peroxisome	54.29	75.69
Os04t0518400-01	Rice	extracellular, plasma membrane	75.95	75.63
TraesCS2D01G377600.1	Wheat	plastid	75.25	75.46
Zm00001d017276_P001	Maize	peroxisome	74.68	75.43
HORVU2Hr1G038120.1	Barley	cytosol, peroxisome, plastid	74.96	75.39
TraesCS2D01G204700.1	Wheat	peroxisome	74.96	75.39
TraesCS2D01G218700.1	Wheat	peroxisome	74.96	75.39
TraesCS2B01G224000.1	Wheat	peroxisome	74.82	75.25
TraesCS2B01G224300.1	Wheat	cytosol, peroxisome, plastid	74.54	75.07
OQU81984	Sorghum	peroxisome	75.39	75.07
TraesCS1B01G122800.1	Wheat	cytosol, peroxisome, plastid	74.68	75.0
TraesCS1D01G103500.1	Wheat	cytosol, peroxisome, plastid	74.68	75.0
HORVU1Hr1G022060.1	Barley	cytosol, peroxisome, plastid	74.54	74.96
Os02t0626400-01	Rice	mitochondrion, plasma membrane	75.67	74.93
TraesCS2B01G398000.2	Wheat	plastid	75.11	74.89
TraesCS2B01G398400.1	Wheat	cytosol, peroxisome, plastid	75.11	74.89
TraesCS2D01G377200.1	Wheat	cytosol, peroxisome, plastid	75.11	74.89
Os05t0427400-00	Rice	cytosol, peroxisome, plastid	75.39	74.86
TraesCS6B01G258500.1	Wheat	extracellular, unclear	75.11	74.79
CDX99621	Canola	mitochondrion	57.52	74.77
TraesCS2D01G377500.1	Wheat	cytosol, peroxisome, plastid	74.96	74.75
Zm00001d017275_P001	Maize	extracellular	75.53	74.69
HORVU0Hr1G016330.1	Barley	cytosol, peroxisome, plastid	75.11	74.69
TraesCS1B01G048400.2	Wheat	cytosol, peroxisome, plastid	74.26	74.68
EES05455	Sorghum	cytosol, peroxisome, plastid	74.96	74.65
EES07176	Sorghum	cytosol, peroxisome, plastid	74.96	74.65
EES07177	Sorghum	cytosol, peroxisome, plastid	74.96	74.65
TraesCS2B01G398200.1	Wheat	cytosol, peroxisome, plastid	74.82	74.61
TraesCS2D01G377400.1	Wheat	cytosol, peroxisome, plastid	74.82	74.61
TraesCS6D01G212400.1	Wheat	cytosol, peroxisome, plastid	74.82	74.51
TraesCS1D01G039400.1	Wheat	golgi	73.98	74.4
EES07175	Sorghum	cytosol, peroxisome, plastid	75.11	74.37
TraesCS1D01G039500.1	Wheat	cytosol, peroxisome, plastid	74.68	74.37
Os02t0627100-01	Rice	plasma membrane	74.54	74.33
HORVU6Hr1G058840.1	Barley	cytosol, peroxisome, plasma membrane	74.4	74.3
TraesCS6B01G258600.1	Wheat	cytosol, peroxisome, plasma membrane	74.4	74.3
TraesCS5B01G468300.1	Wheat	cytosol, peroxisome, plastid	73.84	74.26
TraesCS1B01G048500.1	Wheat	cytosol, peroxisome, plastid	74.54	74.23
CDX74991	Canola	peroxisome	39.66	74.21
CDX91331	Canola	peroxisome	39.66	74.21
HORVU2Hr1G089540.1	Barley	peroxisome	48.95	74.2
Zm00001d017279_P001	Maize	cytosol, peroxisome, plastid	74.54	74.13
Zm00001d051163_P002	Maize	peroxisome	74.82	74.09
TraesCS1B01G048100.1	Wheat	cytosol, peroxisome, plastid	74.4	74.09
TraesCS1B01G048300.1	Wheat	cytosol, peroxisome, plastid	74.26	74.05
TraesCS1B01G048200.1	Wheat	cytosol, peroxisome, plastid	74.26	73.95
TraesCS5B01G468400.1	Wheat	peroxisome	57.38	73.91
Zm00001d051166_P001	Maize	extracellular	74.4	73.88
TraesCS6D01G212500.1	Wheat	peroxisome	73.84	73.74
AT5G04230.2	Thale cress	peroxisome	71.45	72.78
Os04t0518100-01	Rice	plasma membrane	71.87	72.28
Os02t0626100-01	Rice	extracellular, plasma membrane	71.17	72.18
TraesCS6B01G258400.2	Wheat	cytosol, peroxisome, plastid	71.31	72.02
TraesCS6D01G212200.1	Wheat	extracellular, golgi, unclear	71.31	72.02
CDY13306	Canola	peroxisome	21.24	71.9
Os02t0626600-00	Rice	plasma membrane	72.29	71.89
EES12521	Sorghum	cytosol	71.03	71.83
Zm00001d017274_P001	Maize	plasma membrane	71.03	71.83
PGSC0003DMT400014003	Potato	peroxisome	67.37	71.81
CDY18463	Canola	peroxisome	26.44	71.48
EES07174	Sorghum	cytosol, peroxisome, plastid	70.75	71.45
Zm00001d051161_P003	Maize	plastid	70.46	71.27
TraesCS3B01G027800.1	Wheat	mitochondrion	54.43	71.14
TraesCS2B01G398300.2	Wheat	peroxisome	36.71	70.92
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	69.62	70.92
Zm00001d029015_P001	Maize	peroxisome	39.66	70.85
TraesCS2B01G020100.1	Wheat	peroxisome	67.79	70.78
CDY15917	Canola	cytosol, peroxisome, plastid	69.48	70.77
HORVU2Hr1G089440.9	Barley	plasma membrane	75.53	70.01
HORVU2Hr1G038140.1	Barley	mitochondrion, plastid	70.32	69.16
Zm00001d033286_P001	Maize	peroxisome	67.09	68.34
TraesCS3D01G016300.1	Wheat	peroxisome	65.82	67.92
TraesCS3B01G053900.1	Wheat	peroxisome	65.54	67.63
Os12t0520200-01	Rice	plasma membrane	64.56	67.5
HORVU3Hr1G005330.2	Barley	cytosol, peroxisome, plasma membrane	65.12	67.1
EER93773	Sorghum	peroxisome	65.96	66.15
Zm00001d020933_P001	Maize	mitochondrion	19.55	65.88
TraesCS3D01G016500.1	Wheat	peroxisome	63.57	65.6
Zm00001d027249_P001	Maize	peroxisome	20.53	65.47
HORVU6Hr1G058820.2	Barley	mitochondrion	64.56	64.74
Zm00001d003016_P001	Maize	plastid	71.59	64.51
Zm00001d053619_P001	Maize	mitochondrion	35.72	60.05
GSMUA_Achr9P15990_001	Banana	peroxisome	56.82	57.47
Zm00001d051164_P001	Maize	peroxisome	12.52	56.69
CDY61769	Canola	peroxisome	19.55	54.94
Bra028793.1-P	Field mustard	peroxisome	22.64	54.76
HORVU2Hr1G062750.1	Barley	mitochondrion	14.06	54.35
Os12t0461300-00	Rice	plastid	17.44	49.01
Os08t0308300-00	Rice	plastid	9.85	37.23

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	MapMan:9.2.1.1.1
InterPro:Aromatic_Lyase	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841
GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	UniProt:M1D3N2
PFAM:PF00221	EnsemblPlantsGene:PGSC0003DMG400031365	PGSC:PGSC0003DMG400031365	EnsemblPlants:PGSC0003DMT400080548	ScanProsite:PS00488	PANTHER:PTHR10362
PANTHER:PTHR10362:SF32	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	TIGRFAMs:TIGR01226
UniParc:UPI000296AEA3	SEG:seg	:	:	:	:

Description

Phenylalanine ammonia-lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400031365]

Coordinates

chr10:-:51926201..51930606

Molecular Weight (calculated)

77547.9 Da

IEP (calculated)

6.183

GRAVY (calculated)

-0.165

Length

711 amino acids

Sequence
(BLAST)

001: MAGFIDGHQD LDFCIKVDPL NWEMAAESLR GSHLDEVKKM VAEFRKPVVK LGGETLTVAQ VASIAAKVNV ENVKVELSED ARAGVKASSD WVMESMSKGT
101: DSYGVTTGFG ATSHRRTKNG GALQKELIRF LNAGVFGNGT ESCHTLPQSS TRAAMLVRIN TLLQGYSGIR FEILEAITKL INHNVTPCLP LRGTITASGD
201: LVPLSYIAGL LTGRPNSKAV GPNGETLNAE EAFRVAGVNG GFFELQPKEG LALVNGTAVG SGLASIVLFD ANVLAVFSEV LSAIFAEVMN GKPEFTDHLT
301: HKLKHHPGQI EAAAIMEHIL DGSAYVKAAQ KLHEMDPLQK PKQDRYALRT SPQWLGPQIE VIRSATKMIE REINSVNDNP LIDVSRNKAL HGGNFQGTPI
401: GVSMDNARLA LASIGKLMFA QFSELVNDYY NNGLPSNLTA GRNPSLDYGF KGSEIAMASY CSELQFLANP VTNHVQSAEQ HNQDVNSLGL ISARKTAEAV
501: DILKLMSSTY LVALCQAIDL RHLEENLRNA VKNTVSQVAK RTLTMGANGE LHPSRFCEKD LLRIVDREYL FAYADDPCSA NYPLMQKLRQ VLVDHALQNG
601: ENEKNSSSSI FQKIVAFEEE LKSVLPKEVE SARVALESGN PAIANRINEC RSYPLYKFVR EELGTELLTG ERVRSPGEEC DKVFTAMCNG QIIDSLLECL
701: KEWNGAPLPI C

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.