Factsheet for VIT_13s0019g04460.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g036470.1.1	Tomato	mitochondrion	27.94	88.21
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	85.75	87.32
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	56.57	87.21
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	82.16	86.46
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	84.51	86.06
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	84.51	86.06
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	84.51	86.06
VIT_00s2849g00010.t01	Wine grape	peroxisome	36.65	86.04
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	84.37	85.92
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	84.37	85.92
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	84.37	85.92
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	84.09	85.63
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	84.09	85.63
PGSC0003DMT400080765	Potato	peroxisome	51.45	85.52
KRG91925	Soybean	cytosol, peroxisome, plastid	84.37	85.08
VIT_06s0004g02620.t01	Wine grape	cytosol, peroxisome, plastid	84.23	84.94
Solyc03g042560.1.1	Tomato	peroxisome	54.36	84.33
Solyc03g036480.1.1	Tomato	peroxisome	11.89	84.31
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	82.71	84.11
PGSC0003DMT400055489	Potato	mitochondrion	45.37	83.89
Solyc10g086180.1.1	Tomato	extracellular	82.16	83.54
Solyc09g007920.2.1	Tomato	extracellular, nucleus	82.99	83.22
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	82.99	83.22
VIT_16s0039g01300.t01	Wine grape	vacuole	84.37	83.11
Solyc09g007910.2.1	Tomato	extracellular, nucleus	82.02	82.25
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	82.02	82.13
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	81.47	81.92
Solyc09g007890.1.1	Tomato	plastid	81.05	81.5
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	77.45	81.28
Solyc03g078280.1.1	Tomato	peroxisome	27.8	77.91
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	39.14	77.53
VIT_16s0039g01320.t01	Wine grape	peroxisome	13.42	75.78
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	15.08	75.17
PGSC0003DMT400055529	Potato	cytosol	17.01	73.65
Solyc03g071870.1.1	Tomato	peroxisome	15.35	64.53
TraesCSU01G030600.1	Wheat	peroxisome	9.27	59.82
Solyc10g011930.1.1	Tomato	cytosol	10.37	59.06
VIT_11s0016g01640.t01	Wine grape	peroxisome	53.11	57.74
Solyc10g011920.1.1	Tomato	cytosol	10.1	57.48
VIT_11s0016g01660.t01	Wine grape	peroxisome	11.89	49.43
VIT_11s0016g01520.t01	Wine grape	peroxisome	60.72	49.05
VIT_11s0016g01510.t01	Wine grape	peroxisome	13.83	28.17
TraesCS5A01G558600.1	Wheat	mitochondrion	16.04	27.68

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:100233012
wikigene:100233012	MapMan:9.2.1.1.1	ProteinID:ABL74865	ProteinID:ABL74865.1	InterPro:Aromatic_Lyase	ProteinID:CCB56174
ProteinID:CCB56174.1	ncoils:Coil	EMBL:DQ887093	UniProt:F6HNF5	EMBL:FN595998	InterPro:Fumarase/histidase_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009698
GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748	GO:GO:0045548
InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	EntrezGene:LOC100233012	wikigene:LOC100233012	PFAM:PF00221
ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF32	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf
SUPFAM:SSF48557	TIGR:TC60180	TIGRFAMs:TIGR01226	UniParc:UPI00015C9B4F	ArrayExpress:VIT_13s0019g04460	EnsemblPlantsGene:VIT_13s0019g04460
EnsemblPlants:VIT_13s0019g04460.t01	unigene:Vvi.9365	RefSeq:XP_002272926	RefSeq:XP_002272926.1	RefSeq:XP_010658395.1	:

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:F6HNF5]

Coordinates

chr13:+:5881334..5885161

Molecular Weight (calculated)

78835.3 Da

IEP (calculated)

6.270

GRAVY (calculated)

-0.191

Length

723 amino acids

Sequence
(BLAST)

001: MELSNGNHCH TNGKASIESF CMGDTGTKAA ADPLNWNMAA ESLKGSHLDE VKRMVEEYRR QVVQLGGETL TISQVAAVAS RDTGVTVELS EEAREGVKAS
101: SDWVMDSMNN GTDSYGVTTG FGATSHRRTK QGGALQMELI RFLNAGIFGN GTESCHTLPH SATRASMLVR INTLLQGYSG IRFEILEAIT KLINHNITPC
201: LPLRGTISAS GDLVPLSYIA GLLLGRSSCK AVGPNGEPLS AEEAFRVAGI KGGFFELQPK EGLALVNGTA VGSGMASMVL FEANILAVLS EVLSALFAEV
301: MQGKPEFTDH LTHKLKHHPG QIEAAAIMEH ILDGSSYIKA AQKLHEMDPL QKPKQDRYAL RTSPQWLGPQ IEVIRAATKS IEREINSVND NPLIDVSRNK
401: ALHGGNFQGT PIGVSMDNTR LAIASIGKLM FAQFSELVND FYNNGLPSNL SGGRNPSLDY GFKGAEIAMA SYCSELQFLA NPVTNHVQSA EQHNQDVNSL
501: GLISSRKTAE AVDILKLMSS TFLIALSQAI DLRHLEENLK NTVKNTVSQV AKRVLTIGFN GELHPSRFCE KDLLKIVDRE HVFAYIDDPC SSTYPLMQKL
601: RQVLVEHALI NGEREKNSST SIFQKIVAFE DELKALLPKE VESTRIDYEN GNSAISNRIK DCRSYPLYKF VREELGASFL TGEKTTSPGE ECDKVFTAMC
701: AGKLIDPLLD CLKEWNGAPL PIC

Best Arabidopsis Sequence Match ( AT3G10340.1 )
(BLAST)

001: MELCNQNNHI TAVSGDPLNW NATAEALKGS HLDEVKRMVK EYRKEAVKLG GETLTIGQVA AVARGGGGST VELAEEARAG VKASSEWVME SMNRGTDSYG
101: VTTGFGATSH RRTKQGGALQ NELIRFLNAG IFGPGAGDTS HTLPKPTTRA AMLVRVNTLL QGYSGIRFEI LEAITKLLNH EITPCLPLRG TITASGDLVP
201: LSYIAGLLTG RPNSKAVGPS GETLTASEAF KLAGVSSFFE LQPKEGLALV NGTAVGSGLA STVLFDANIL AVLSEVMSAM FAEVMQGKPE FTDHLTHKLK
301: HHPGQIEAAA IMEHILDGSS YVKEAQLLHE MDPLQKPKQD RYALRTSPQW LGPQIEVIRA ATKMIEREIN SVNDNPLIDV SRNKALHGGN FQGTPIGVAM
401: DNSRLAIASI GKLMFAQFSE LVNDFYNNGL PSNLSGGRNP SLDYGFKGAE IAMASYCSEL QFLANPVTNH VQSAEQHNQD VNSLGLISSR KTAEAVDILK
501: LMSTTYLVAL CQAVDLRHLE ENLKKAVKSA VSQVAKRVLT VGANGELHPS RFTERDVLQV VDREYVFSYA DDPCSLTYPL MQKLRHILVD HALADPEREA
601: NSATSVFHKI GAFEAELKLL LPKEVERVRV EYEEGTSAIA NRIKECRSYP LYRFVRDELN TELLTGENVR SPGEEFDKVF LAISDGKLID PLLECLKEWN
701: GAPVSIC

Arabidopsis Description

PAL4Phenylalanine ammonia-lyase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS45]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.