Factsheet for VIT_16s0039g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	99.3	99.3
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	99.3	99.3
VIT_16s0039g01320.t01	Wine grape	peroxisome	17.89	99.22
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	65.49	99.15
VIT_00s2849g00010.t01	Wine grape	peroxisome	42.96	99.03
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	98.31	98.31
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	98.03	98.03
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	97.61	97.61
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	97.32	97.32
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	97.04	97.04
VIT_16s0039g01300.t01	Wine grape	vacuole	99.15	95.91
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	94.08	94.08
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	85.92	84.37
VIT_06s0004g02620.t01	Wine grape	cytosol, peroxisome, plastid	84.65	83.82
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	83.38	83.5
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	83.1	83.45
PGSC0003DMT400014003	Potato	peroxisome	67.61	71.96
VIT_11s0016g01640.t01	Wine grape	peroxisome	55.49	59.25
VIT_11s0016g01660.t01	Wine grape	peroxisome	12.96	52.87
VIT_11s0016g01520.t01	Wine grape	peroxisome	63.1	50.06
VIT_11s0016g01510.t01	Wine grape	peroxisome	13.52	27.04

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:100240904
wikigene:100240904	MapMan:9.2.1.1.1	EMBL:AB015870	ProteinID:ABM67591	ProteinID:ABM67591.1	InterPro:Aromatic_Lyase
ProteinID:BAA31258	ProteinID:BAA31258.1	ProteinID:CCB50564	ProteinID:CCB50564.1	EMBL:EF192469	UniProt:F6HEB8
EMBL:FN595750	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841
GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	EntrezGene:LOC100240904
wikigene:LOC100240904	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF30	InterPro:Phe/His_NH3-lyase_AS
InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	TIGR:TC66528	TIGRFAMs:TIGR01226	UniParc:UPI0002108A6B
ArrayExpress:VIT_16s0039g01240	EnsemblPlantsGene:VIT_16s0039g01240	EnsemblPlants:VIT_16s0039g01240.t01	RefSeq:XP_002268732	RefSeq:XP_002268732.1	RefSeq:XP_003633986
RefSeq:XP_003633986.1	SEG:seg	:	:	:	:

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:F6HEB8]

Coordinates

chr16:+:688542..691191

Molecular Weight (calculated)

77156.4 Da

IEP (calculated)

6.433

GRAVY (calculated)

-0.195

Length

710 amino acids

Sequence
(BLAST)

001: MDATNCHGSN KVESFCVSDP LNWGMAAETL KGSHLDEVKR MVAEYRKPVV RLGGETLTIS QVAAIAGREG DVGVELSETA RAGVNASSEW VMESMSKGTD
101: SYGVTTGFGA TSHRRTKQGG ALQKELIRFL NAGIFGNGRE SCHTLPHSAT RAAMLVRINT LLQGYSGIRF EILEAITKLL NHNITPCLPL RGTVTASGDL
201: VPLSYIAGLL TGRPNSKAVG PSGEVVNAEE AFKMAGIESG FFELQPKEGL ALVNGTAVGS GLASMVLFET NVLAVLSEVL SAVFAEVMQG KPEFTDHLTH
301: KLKHHPGQIE AAAIMEHILD GSSYVKEAKK LHEMDPLQKP KQDRYALRTS PQWLGPQIEV IRASTKSIER EINSVNDNPL IDVSRNKALH GGNFQGTPIG
401: VFMDNTRLAI AAIGKLMFAQ FSELVNDFYN NGLPSNLSGS RNPSLDYGFK GAEIAMASYC SELQFLANPV TNHVESAEQH NQDVNSLGLI SSRKTAEAVD
501: ILKLMSTTYL VALCQAIDLR HLEENLKSTV KKTVSHVAKK TLTTGANGEL HPSRFCEKDL LKVVDREHVF AYIDDPCSAT YPLMQKVRQV LVEHALNNGE
601: NEKNGSTSIF QKIGAFEEEL KAVLPKEVES ARDGVESGNP SIPNRIKECR SYPLYKFVRE ELGTGLLTGE KVRSPGEDFD KVFTAMCEGK IIDPLLDCLS
701: AWNGAPLPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.