Factsheet for VIT_08s0040g01710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, plastid

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	62.82	95.1
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	94.37	94.37
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	94.08	94.08
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	94.08	94.08
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	94.08	94.08
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	93.94	93.94
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	93.8	93.8
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	93.66	93.66
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	93.52	93.52
VIT_00s2849g00010.t01	Wine grape	peroxisome	40.42	93.18
VIT_16s0039g01300.t01	Wine grape	vacuole	94.08	91.01
VIT_16s0039g01320.t01	Wine grape	peroxisome	16.2	89.84
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	87.32	85.75
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	84.23	84.34
VIT_06s0004g02620.t01	Wine grape	cytosol, peroxisome, plastid	85.07	84.24
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	83.66	84.02
PGSC0003DMT400014003	Potato	peroxisome	66.76	71.06
VIT_11s0016g01640.t01	Wine grape	peroxisome	56.06	59.85
VIT_11s0016g01660.t01	Wine grape	peroxisome	12.68	51.72
VIT_11s0016g01520.t01	Wine grape	peroxisome	63.66	50.5
VIT_11s0016g01510.t01	Wine grape	peroxisome	13.66	27.32

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:100241377
wikigene:100241377	MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase	ProteinID:CCB57082	ProteinID:CCB57082.1	UniProt:F6HR33
EMBL:FN596008	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841
GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	EntrezGene:LOC100241377
wikigene:LOC100241377	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF32	InterPro:Phe/His_NH3-lyase_AS
InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	TIGR:TC69585	TIGRFAMs:TIGR01226	UniParc:UPI00015CAC8C
ArrayExpress:VIT_08s0040g01710	EnsemblPlantsGene:VIT_08s0040g01710	EnsemblPlants:VIT_08s0040g01710.t01	unigene:Vvi.1950	RefSeq:XP_002281799	RefSeq:XP_002281799.1

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:F6HR33]

Coordinates

chr8:-:12827707..12830497

Molecular Weight (calculated)

77484.8 Da

IEP (calculated)

6.035

GRAVY (calculated)

-0.184

Length

710 amino acids

Sequence
(BLAST)

001: MEAMNSHGSN KVESFCVSDP LNWGVAAEEL KGSHLDEVKR MVAEYRKPVV RLGGETLTIS QVAAIAGREE DVTVELSEAA REGVKASSDW VMESMNKGTD
101: SYGVTTGFGA TSHRRTKEGG ALQKELIRFL NAGIFGNGTD SCHTLPHSAT RAAMLVRINT LLQGYSGIRF EILEAITKLL NHNITPSLPL RGTITASGDL
201: VPLSYIAGLL TGRPNSKAVG PTGEVVNAEE AFKMAGIESG FFELQPKEGL ALVNGTAVGS GLASMVLFEA NVLAVLSEVL SAIFAEVMQG KPEFTDHLTH
301: KLKHHPGQIE AAAIMEHILD GSSYVKEAKK LHEMDPLQKP KQDRYALRTS PQWLGPQIEV IRASTKSIER EINSVNDNPL IDVSRNKALH GGNFQGTPIG
401: VSMDNTRLAI AAIGKLMFAQ FSELVNDFYN NGLPSNLSGG RNPSLDYGFK GAEIAMASYC SELQFLANPV TNHVQSAEQH NQDVNSLGLI SSRKTAEAVD
501: ILKLMSSTYL VALCQAIDLR HLEENLKITV KNTISHIAKK TLTTGVNGEL HPSRFCEKDL LKVVDREYIF AYIDDPCSET YPLMQKVRQV LVEHALNNGE
601: NEKNVSTSIF QKIVAFEEEL KALLPKEVES TRAGLESGNP FIPNRIKDCR SYPLYKFVRE ELGTGLLTGE KVRSPGEEFD KVFTAMCEGK IIDPLLDCLS
701: GWNGAPLPIC

Best Arabidopsis Sequence Match ( AT5G04230.1 )
(BLAST)

001: MEFRQPNATA LSDPLNWNVA AEALKGSHLE EVKKMVKDYR KGTVQLGGET LTIGQVAAVA SGGPTVELSE EARGGVKASS DWVMESMNRD TDTYGITTGF
101: GSSSRRRTDQ GAALQKELIR YLNAGIFATG NEDDDRSNTL PRPATRAAML IRVNTLLQGY SGIRFEILEA ITTLLNCKIT PLLPLRGTIT ASGDLVPLSY
201: IAGFLIGRPN SRSVGPSGEI LTALEAFKLA GVSSFFELRP KEGLALVNGT AVGSALASTV LYDANILVVF SEVASAMFAE VMQGKPEFTD HLTHKLKHHP
301: GQIEAAAIME HILDGSSYVK EALHLHKIDP LQKPKQDRYA LRTSPQWLGP QIEVIRAATK MIEREINSVN DNPLIDVSRN KAIHGGNFQG TPIGVAMDNT
401: RLALASIGKL MFAQFTELVN DFYNNGLPSN LSGGRNPSLD YGLKGAEVAM ASYCSELQFL ANPVTNHVES ASQHNQDVNS LGLISSRTTA EAVVILKLMS
501: TTYLVALCQA FDLRHLEEIL KKAVNEVVSH TAKSVLAIEP FRKHDDILGV VNREYVFSYV DDPSSLTNPL MQKLRHVLFD KALAEPEGET DTVFRKIGAF
601: EAELKFLLPK EVERVRTEYE NGTFNVANRI KKCRSYPLYR FVRNELETRL LTGEDVRSPG EDFDKVFRAI SQGKLIDPLF ECLKEWNGAP ISIC

Arabidopsis Description

PAL3Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:F4JW69]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.