Factsheet for VIT_16s0039g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
vacuole 1
peroxisome 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	100.0	27.29
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	99.22	17.89
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	99.22	17.89
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	98.44	17.75
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	97.66	17.61
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	97.66	17.61
VIT_16s0039g01300.t01	Wine grape	vacuole	99.22	17.3
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	95.31	17.18
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	93.75	16.9
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	93.75	16.9
VIT_11s0016g01510.t01	Wine grape	peroxisome	46.09	16.62
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	89.84	16.2
KRH67701	Soybean	endoplasmic reticulum, peroxisome, plastid	78.91	14.17
KRH67700	Soybean	nucleus, peroxisome, plastid	78.91	14.11
KRG95994	Soybean	cytosol, peroxisome, plastid	78.12	14.04
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	75.78	13.42
KRH19942	Soybean	cytosol, endoplasmic reticulum, peroxisome	74.22	13.27
KRH32543	Soybean	cytosol, endoplasmic reticulum, peroxisome	72.66	12.97
VIT_06s0004g02620.t01	Wine grape	cytosol, peroxisome, plastid	71.88	12.83
VIT_11s0016g01640.t01	Wine grape	peroxisome	46.09	8.87
VIT_11s0016g01520.t01	Wine grape	peroxisome	44.53	6.37
VIT_11s0016g01660.t01	Wine grape	peroxisome	0.0	0.0
VIT_00s2849g00010.t01	Wine grape	peroxisome	0.0	0.0

Protein Annotations

ArrayExpress:VIT_16s0039g01320	EMBL:FN595750	EnsemblPlants:VIT_16s0039g01320.t01	EnsemblPlantsGene:VIT_16s0039g01320	Gene3D:1.10.275.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0016829	GO:GO:0016841	GO:GO:0045548	InterPro:Aromatic_Lyase	InterPro:Fumarase/histidase_N
InterPro:IPR024083	InterPro:L-Aspartase-like	PANTHER:PTHR10362	PANTHER:PTHR10362:SF30	PFAM:PF00221	ProteinID:CCB50567
ProteinID:CCB50567.1	SUPFAM:SSF48557	UniParc:UPI0002108A6D	UniProt:F6HEC1	MapMan:35.1	:

Description

No Description!

Coordinates

chr16:-:724093..724558

Molecular Weight (calculated)

13719.2 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.396

Length

128 amino acids

Sequence
(BLAST)

001: MDATNCHGSN KVESFCVSDP LNWGMAAETL KGSHLDEVKR MVAEYRKPVV RLGGETLTIS QVAAIAGREG DVNVELSETA RAGVNASSEW VMESMSKGTD
101: SYGVTTGFGA TSHRRTKQGG ALQKELIR

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.