Factsheet for VIT_00s2849g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g01660.t01	Wine grape	peroxisome	29.87	52.87
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	99.35	43.1
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	99.03	42.96
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	99.03	42.96
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	98.7	42.82
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	98.05	42.54
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	98.05	42.54
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	97.73	42.39
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	96.75	41.97
VIT_16s0039g01300.t01	Wine grape	vacuole	99.68	41.83
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	93.18	40.42
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	86.04	36.65
VIT_06s0004g02620.t01	Wine grape	cytosol, peroxisome, plastid	84.42	36.26
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	80.52	34.98
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	80.19	34.94
PGSC0003DMT400014003	Potato	peroxisome	72.08	33.28
VIT_11s0016g01640.t01	Wine grape	peroxisome	58.44	27.07
VIT_11s0016g01520.t01	Wine grape	peroxisome	62.99	21.68
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	21.43	14.07
VIT_11s0016g01510.t01	Wine grape	peroxisome	5.19	4.51
VIT_16s0039g01320.t01	Wine grape	peroxisome	0.0	0.0

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.20.200.10	EntrezGene:100855356	wikigene:100855356
MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase	ProteinID:CCB61153	ProteinID:CCB61153.1	UniProt:F6I2I6	EMBL:FN596691
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009698
GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748	GO:GO:0045548
InterPro:IPR023144	InterPro:L-Aspartase-like	EntrezGene:LOC100855356	wikigene:LOC100855356	PFAM:PF00221	PANTHER:PTHR10362
PANTHER:PTHR10362:SF32	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	UniParc:UPI0002109EC3	ArrayExpress:VIT_00s2849g00010	EnsemblPlantsGene:VIT_00s2849g00010
EnsemblPlants:VIT_00s2849g00010.t01	RefSeq:XP_003635685	RefSeq:XP_003635685.1	:	:	:

Description

No Description!

Coordinates

chrUn:+:43123455..43124471

Molecular Weight (calculated)

33944.6 Da

IEP (calculated)

5.672

GRAVY (calculated)

-0.205

Length

308 amino acids

Sequence
(BLAST)

001: MDNTRLAIAA IGKLMFAQFS ELVIDFYNNG LPSNLSGSRN PSLDYGFKGA EIAMASYCSE LQFLANPVTN HVESAEQHNQ DVNSLGLISS RKTAEAVDIL
101: KLMSTTYLVA LCQAIDLRHL EENLKSTVKK TVSHVAKKTL TTGANGELHP SRFCEKDLLK VVDREHVFAY IDDPCSATYP LMQKVRQVLV EHALNNGENE
201: KNGSTSIFQK IVAFEEELKA VLPKEVESAR GGVESGNPSI PNRIKECRSY PLYKFVREEL GTGLLTGEKV RSPGEDFDKV FTAMCEGKII DPLLDCLSAW
301: NGAPLPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.