Factsheet for VIT_16s0039g01360.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2849g00010.t01	Wine grape	peroxisome	43.1	99.35
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	98.03	98.03
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	97.89	97.89
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	64.51	97.65
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	97.61	97.61
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	97.32	97.32
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	96.9	96.9
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	96.62	96.62
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	96.34	96.34
VIT_16s0039g01320.t01	Wine grape	peroxisome	17.18	95.31
VIT_16s0039g01300.t01	Wine grape	vacuole	98.45	95.23
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	93.52	93.52
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	85.63	84.09
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	82.82	82.93
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	82.54	82.89
VIT_06s0004g02620.t01	Wine grape	cytosol, peroxisome, plastid	83.66	82.85
PGSC0003DMT400014003	Potato	peroxisome	67.18	71.51
VIT_11s0016g01640.t01	Wine grape	peroxisome	54.93	58.65
VIT_11s0016g01660.t01	Wine grape	peroxisome	12.96	52.87
VIT_11s0016g01520.t01	Wine grape	peroxisome	62.39	49.5
VIT_11s0016g01510.t01	Wine grape	peroxisome	13.38	26.76

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:100252889
wikigene:100252889	MapMan:9.2.1.1.1	EMBL:AM460221	InterPro:Aromatic_Lyase	ProteinID:CAN61378	ProteinID:CAN61378.1
ProteinID:CCB50568	ProteinID:CCB50568.1	UniProt:F6HEC2	EMBL:FN595750	InterPro:Fumarase/histidase_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006559
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009698	GO:GO:0009800
GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144
InterPro:IPR024083	InterPro:L-Aspartase-like	EntrezGene:LOC100252889	wikigene:LOC100252889	PFAM:PF00221	ScanProsite:PS00488
PANTHER:PTHR10362	PANTHER:PTHR10362:SF30	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557
TIGRFAMs:TIGR01226	UniParc:UPI00015C8D04	ArrayExpress:VIT_16s0039g01360	EnsemblPlantsGene:VIT_16s0039g01360	EnsemblPlants:VIT_16s0039g01360.t01	RefSeq:XP_002268773
RefSeq:XP_002268773.1	RefSeq:XP_010662075.1	SEG:seg	:	:	:

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:F6HEC2]

Coordinates

chr16:+:777110..779568

Molecular Weight (calculated)

77156.5 Da

IEP (calculated)

6.628

GRAVY (calculated)

-0.179

Length

710 amino acids

Sequence
(BLAST)

001: MDATNCHGSN KVESFCVSDP LNWGMAAETL KGSHLDEVKR MVAEYRKPVV QLGGETLTIS QVAAIAGREG DVSVELSETA RAGVKASSDW VMESMKKGID
101: SYGVTTGFGA TSHRRTKQGG ALQKELIRVL NAGIFGNGRE SCHTLPHSAT RAAMLVRINS LLQGYSGIRF EILEAITKLL NHNITPCLPL RGTVTASGDL
201: VPLSYIAGLL TGRPNSKAVG PSGEVVNAEE AFKMAGIESG FFELQPKEGF ALVNGTAVGS GLASMVLFET NVLAVLSEVL SAVFAEVMQG KPEFTDHLTH
301: KLKHHPGQIE AAAIMEHILD GISYVKEAKK LHEMDPLQKP KQDRYALRTS PQWLGPHIEV IRASTKSIER EINSVNDNPL IDVSRNKALH GGNFQGTPIG
401: VSMDNTRLAI AAIGKLMFAQ FSELVNDFYN NGLPSNLSGS RNPSLDYGFK GAEIAMASYC SELQFLANPV TNHVESAEQH NQDVNSLGLI SSRKTAEAVD
501: ILKLMSTTYL VALCQAIDLR HLEENLKSTV KKTVSHVAKK TLTTGANGEL HPSRFCEKDL LKVVDREHVF AYIDDPCSAT YPLMQKVRQV LVEHALNNGE
601: NEKNGSTSIF QKILAFEEEL KAVLPKEVES ARGGVESGNP SIPNRIKECR SYPLYKFVRE ELGTGLLTGE KVRSPGEDFD KVFTAMCEGK IIDPLLDCLS
701: AWNGAPLPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.