Factsheet for Solyc05g056170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	96.9	97.17
Solyc03g036470.1.1	Tomato	mitochondrion	28.35	87.77
Solyc03g036480.1.1	Tomato	peroxisome	12.55	87.25
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	56.84	85.93
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	84.34	84.23
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	83.78	83.66
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	83.64	83.52
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	83.64	83.52
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	83.5	83.38
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	83.5	83.38
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	83.5	83.38
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	83.36	83.24
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	82.93	82.82
Solyc10g086180.1.1	Tomato	extracellular	82.37	82.14
Solyc03g042560.1.1	Tomato	peroxisome	53.74	81.76
Solyc09g007920.2.1	Tomato	extracellular, nucleus	82.37	81.0
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	82.23	80.86
Solyc09g007910.2.1	Tomato	extracellular, nucleus	82.09	80.72
VIT_00s2849g00010.t01	Wine grape	peroxisome	34.98	80.52
VIT_16s0039g01300.t01	Wine grape	vacuole	83.36	80.52
Solyc09g007890.1.1	Tomato	plastid	80.11	79.0
Solyc03g078280.1.1	Tomato	peroxisome	27.5	75.58
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	15.37	75.17
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	38.5	74.79
KRH74070	Soybean	peroxisome	71.51	72.12
Solyc03g071870.1.1	Tomato	peroxisome	15.94	65.7
Solyc10g011930.1.1	Tomato	cytosol	9.73	54.33
Solyc10g011920.1.1	Tomato	cytosol	9.45	52.76

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	MapMan:9.2.1.1.1
InterPro:Aromatic_Lyase	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841
GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	UniProt:K4C2U1	InterPro:L-Aspartase-like
PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF32	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase
InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	EnsemblPlantsGene:Solyc05g056170.2	EnsemblPlants:Solyc05g056170.2.1	TIGRFAMs:TIGR01226	UniParc:UPI00027656FA

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:K4C2U1]

Coordinates

chr5:+:65560046..65563819

Molecular Weight (calculated)

77466.0 Da

IEP (calculated)

6.615

GRAVY (calculated)

-0.193

Length

709 amino acids

Sequence
(BLAST)

001: MEYVNGNSNG DQVFCVKAQQ QQDPLNWNVS ADALKGSHLD AVKKMVEEYR KPVVRLGGET LTVAQVAAIA AQSGKDVTVQ LSEAARAGVK ASSDWVMEGM
101: RNGTDSYGVT TGFGATSHRR TKQGAALQKE LIRFLNAGVF GKGTESCHTL PHSATRAAML VRINTLLQGY SGIRFEILEA ITKLLNNNIT PCLPLRGTIT
201: ASGDLVPLSY IAGLLTGRPN SKATGPNGEL LDAINAFQQA GIESGFFELQ PKEGLALVNG TAVGSGLASM VLFEANILAI LSEVLSAIFA EVMQGKPEFT
301: DHLTHKLKHH PGQIEAAAIM EHILDGSSYV KEAKKIHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRSST KMIEREINSV NDNPLIDVSR NKALHGGNFQ
401: GTPIGVSMDN TRLALASIGK LLFAQFSELV NDYYNNGLPS NLTGGRNPSL DYGFKGAEIA MASYCSELQF LANPVTNHVQ SAEQHNQDVN SLGLISSRKT
501: EEAVDILKLM SSTYLVALCQ AIDLRHLEEN LKATVKSAVS LAAKKVLITG QNGELHQSRF CEKDLLTMVD REYVFAYADD PCSANYPLMQ KLRQVLVDHA
601: LKNSNTEIFQ KISAFEEELK LVLPKEIESV RCDLENGKAP IGNRIQECRS YPLYKFVREE LGAKYLTGEK ALSPGEVFDK VFTAMNEGKL IDPLLNCLKE
701: WNGAPLPLC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.