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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:
  • cytosol 3
  • vacuole 1
  • peroxisome 1
  • mitochondrion 1
  • endoplasmic reticulum 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37040.1 Solyc03g036470.1.1 AT2G37040.1 21798944
AT2G37040.1 Solyc03g036480.1.1 AT2G37040.1 21798944
AT2G37040.1 Solyc03g042560.1.1 AT2G37040.1 21798944
AT2G37040.1 Solyc03g071860.2.1 AT2G37040.1 21798944
AT2G37040.1 Solyc03g071870.1.1 AT2G37040.1 21798944
AT2G37040.1 Solyc03g078270.1.1 AT2G37040.1 21798944
AT2G37040.1 Solyc03g078280.1.1 AT2G37040.1 21798944
AT2G37040.1 Solyc09g007890.1.1 AT2G37040.1 21798944
AT2G37040.1 Solyc09g007900.2.1 AT2G37040.1 21798944
AT2G37040.1 Solyc09g007910.2.1 AT2G37040.1 21798944
AT2G37040.1 Solyc09g007920.2.1 AT2G37040.1 21798944
AT2G37040.1 Solyc10g011920.1.1 AT2G37040.1 21798944
AT2G37040.1 Solyc10g011930.1.1 AT2G37040.1 21798944
AT2G37040.1 Solyc10g086180.1.1 AT2G37040.1 21798944
AT2G37040.1 Solyc03g036470.1.1 AT3G10340.1 21798944
AT2G37040.1 Solyc03g036480.1.1 AT3G10340.1 21798944
AT2G37040.1 Solyc03g042560.1.1 AT3G10340.1 21798944
AT2G37040.1 Solyc03g071860.2.1 AT3G10340.1 21798944
AT2G37040.1 Solyc03g071870.1.1 AT3G10340.1 21798944
AT2G37040.1 Solyc03g078270.1.1 AT3G10340.1 21798944
AT2G37040.1 Solyc03g078280.1.1 AT3G10340.1 21798944
AT2G37040.1 Solyc09g007890.1.1 AT3G10340.1 21798944
AT2G37040.1 Solyc09g007900.2.1 AT3G10340.1 21798944
AT2G37040.1 Solyc09g007910.2.1 AT3G10340.1 21798944
AT2G37040.1 Solyc09g007920.2.1 AT3G10340.1 21798944
AT2G37040.1 Solyc10g011920.1.1 AT3G10340.1 21798944
AT2G37040.1 Solyc10g011930.1.1 AT3G10340.1 21798944
AT2G37040.1 Solyc10g086180.1.1 AT3G10340.1 21798944
AT3G10340.1 Solyc03g120320.1.1 AT1G15670.1 21798944
AT3G10340.1 Solyc03g120330.1.1 AT1G15670.1 21798944
AT3G10340.1 Solyc06g066770.1.1 AT1G15670.1 21798944
AT3G53260.1 Solyc03g036470.1.1 AT3G10340.1 21798944
AT3G53260.1 Solyc03g036480.1.1 AT3G10340.1 21798944
AT3G53260.1 Solyc03g042560.1.1 AT3G10340.1 21798944
AT3G53260.1 Solyc03g071860.2.1 AT3G10340.1 21798944
AT3G53260.1 Solyc03g071870.1.1 AT3G10340.1 21798944
AT3G53260.1 Solyc03g078270.1.1 AT3G10340.1 21798944
AT3G53260.1 Solyc03g078280.1.1 AT3G10340.1 21798944
AT3G53260.1 Solyc09g007890.1.1 AT3G10340.1 21798944
AT3G53260.1 Solyc09g007900.2.1 AT3G10340.1 21798944
AT3G53260.1 Solyc09g007910.2.1 AT3G10340.1 21798944
AT3G53260.1 Solyc09g007920.2.1 AT3G10340.1 21798944
AT3G53260.1 Solyc10g011920.1.1 AT3G10340.1 21798944
AT3G53260.1 Solyc10g011930.1.1 AT3G10340.1 21798944
AT3G53260.1 Solyc10g086180.1.1 AT3G10340.1 21798944
AT3G53260.1 Solyc03g036470.1.1 AT3G53260.1 21798944
AT3G53260.1 Solyc03g036480.1.1 AT3G53260.1 21798944
AT3G53260.1 Solyc03g042560.1.1 AT3G53260.1 21798944
AT3G53260.1 Solyc03g071860.2.1 AT3G53260.1 21798944
AT3G53260.1 Solyc03g071870.1.1 AT3G53260.1 21798944
AT3G53260.1 Solyc03g078270.1.1 AT3G53260.1 21798944
AT3G53260.1 Solyc03g078280.1.1 AT3G53260.1 21798944
AT3G53260.1 Solyc09g007890.1.1 AT3G53260.1 21798944
AT3G53260.1 Solyc09g007900.2.1 AT3G53260.1 21798944
AT3G53260.1 Solyc09g007910.2.1 AT3G53260.1 21798944
AT3G53260.1 Solyc09g007920.2.1 AT3G53260.1 21798944
AT3G53260.1 Solyc10g011920.1.1 AT3G53260.1 21798944
AT3G53260.1 Solyc10g011930.1.1 AT3G53260.1 21798944
AT3G53260.1 Solyc10g086180.1.1 AT3G53260.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g007920.2.1 Tomato extracellular, nucleus 99.86 99.86
Solyc09g007910.2.1 Tomato extracellular, nucleus 97.78 97.78
PGSC0003DMT400055489 Potato mitochondrion 52.15 96.16
Solyc09g007890.1.1 Tomato plastid 94.04 94.3
Solyc03g042560.1.1 Tomato peroxisome 60.75 93.99
Solyc03g036470.1.1 Tomato mitochondrion 29.82 93.89
Solyc10g086180.1.1 Tomato extracellular 87.93 89.17
Solyc03g036480.1.1 Tomato peroxisome 12.48 88.24
Solyc03g078280.1.1 Tomato peroxisome 31.35 87.6
Solyc03g071860.2.1 Tomato endoplasmic reticulum 43.97 86.85
CDY18464 Canola peroxisome 49.24 83.92
KRH34854 Soybean cytosol, endoplasmic reticulum, peroxisome 79.2 83.11
VIT_13s0019g04460.t01 Wine grape cytosol, endoplasmic reticulum, peroxisome 83.22 82.99
GSMUA_Achr5P03950_001 Banana cytosol, peroxisome, plastid 74.48 82.49
GSMUA_Achr1P09070_001 Banana peroxisome 74.62 82.26
Solyc05g056170.2.1 Tomato cytosol, endoplasmic reticulum, peroxisome 80.86 82.23
Bra017210.1-P Field mustard cytosol, peroxisome, plastid 82.11 81.99
CDX78161 Canola cytosol 56.17 81.65
CDY66761 Canola cytosol, peroxisome, plastid 58.67 81.5
KRG91925 Soybean cytosol, peroxisome, plastid 80.86 81.31
GSMUA_Achr5P18560_001 Banana cytosol, peroxisome, plastid 73.51 81.29
CDX73567 Canola cytosol 55.89 81.25
GSMUA_Achr11P... Banana cytosol, peroxisome, plastid 73.79 81.22
AT2G37040.1 Thale cress cytosol, peroxisome, plastid 81.28 80.83
Bra003126.1-P Field mustard cytosol 79.2 80.76
Solyc03g078270.1.1 Tomato endoplasmic reticulum 16.23 80.69
CDX67566 Canola cytosol 54.92 80.65
GSMUA_Achr8P18960_001 Banana cytosol, peroxisome, plastid 67.13 80.53
AT3G10340.1 Thale cress peroxisome 78.92 80.48
CDX76219 Canola cytosol 58.25 80.46
GSMUA_Achr2P00240_001 Banana peroxisome 72.82 80.4
Bra029831.1-P Field mustard cytosol 78.22 79.89
CDY08611 Canola cytosol 78.22 79.89
AT3G53260.1 Thale cress cytosol 79.33 79.78
Bra006985.1-P Field mustard cytosol 77.53 79.18
CDY00922 Canola cytosol 77.53 79.18
TraesCS2B01G398100.1 Wheat cytosol, peroxisome, plastid 56.31 78.08
GSMUA_Achr11P... Banana peroxisome 69.49 77.92
Bra039777.1-P Field mustard peroxisome 54.65 77.25
TraesCS1D01G039300.1 Wheat mitochondrion 56.45 77.23
TraesCS2D01G204400.1 Wheat peroxisome 71.29 76.95
Solyc03g071870.1.1 Tomato peroxisome 18.31 76.74
Zm00001d003015_P001 Maize peroxisome 75.87 76.5
Os04t0518400-01 Rice extracellular, plasma membrane 75.59 76.33
Bra005221.1-P Field mustard peroxisome 39.11 76.01
Zm00001d017276_P001 Maize peroxisome 74.06 75.85
HORVU2Hr1G038120.1 Barley cytosol, peroxisome, plastid 74.34 75.81
OQU81984 Sorghum peroxisome 75.03 75.77
TraesCS2D01G377600.1 Wheat plastid 74.48 75.74
HORVU2Hr1G089540.1 Barley peroxisome 49.24 75.69
TraesCS5B01G468300.1 Wheat cytosol, peroxisome, plastid 74.2 75.67
EES05455 Sorghum cytosol, peroxisome, plastid 74.9 75.63
EES07176 Sorghum cytosol, peroxisome, plastid 74.9 75.63
EES07177 Sorghum cytosol, peroxisome, plastid 74.9 75.63
Os02t0626400-01 Rice mitochondrion, plasma membrane 75.31 75.63
TraesCS2B01G398000.2 Wheat plastid 74.76 75.6
TraesCS2D01G377200.1 Wheat cytosol, peroxisome, plastid 74.76 75.6
TraesCS1B01G122800.1 Wheat cytosol, peroxisome, plastid 74.2 75.56
TraesCS1D01G103500.1 Wheat cytosol, peroxisome, plastid 74.2 75.56
HORVU1Hr1G022060.1 Barley cytosol, peroxisome, plastid 74.06 75.53
TraesCS1B01G048400.2 Wheat cytosol, peroxisome, plastid 74.06 75.53
TraesCS2D01G204700.1 Wheat peroxisome 74.06 75.53
TraesCS1B01G048300.1 Wheat cytosol, peroxisome, plastid 74.62 75.46
TraesCS2B01G224000.1 Wheat peroxisome 73.93 75.39
TraesCS2D01G218700.1 Wheat peroxisome 73.93 75.39
TraesCS5B01G468400.1 Wheat peroxisome 57.7 75.36
TraesCS6B01G258500.1 Wheat extracellular, unclear 74.62 75.35
Os02t0627100-01 Rice plasma membrane 74.48 75.32
TraesCS1D01G039400.1 Wheat golgi 73.79 75.25
HORVU0Hr1G016330.1 Barley cytosol, peroxisome, plastid 74.62 75.24
Zm00001d017275_P001 Maize extracellular 75.03 75.24
TraesCS1B01G048100.1 Wheat cytosol, peroxisome, plastid 74.48 75.21
TraesCS2B01G398400.1 Wheat cytosol, peroxisome, plastid 74.34 75.18
TraesCS2D01G377400.1 Wheat cytosol, peroxisome, plastid 74.34 75.18
TraesCS2B01G224300.1 Wheat cytosol, peroxisome, plastid 73.51 75.07
TraesCS1D01G039500.1 Wheat cytosol, peroxisome, plastid 74.34 75.07
TraesCS6D01G212400.1 Wheat cytosol, peroxisome, plastid 74.34 75.07
EES07175 Sorghum cytosol, peroxisome, plastid 74.76 75.07
Zm00001d051163_P002 Maize peroxisome 74.76 75.07
TraesCS2B01G398200.1 Wheat cytosol, peroxisome, plastid 74.2 75.04
TraesCS2D01G377500.1 Wheat cytosol, peroxisome, plastid 74.2 75.04
Zm00001d017279_P001 Maize cytosol, peroxisome, plastid 74.34 74.97
Zm00001d051166_P001 Maize extracellular 74.34 74.86
TraesCS1B01G048200.1 Wheat cytosol, peroxisome, plastid 74.06 74.79
TraesCS1B01G048500.1 Wheat cytosol, peroxisome, plastid 74.06 74.79
HORVU6Hr1G058840.1 Barley cytosol, peroxisome, plasma membrane 73.79 74.72
Os05t0427400-00 Rice cytosol, peroxisome, plastid 74.06 74.58
CDX74991 Canola peroxisome 39.25 74.47
CDX91331 Canola peroxisome 39.25 74.47
TraesCS6B01G258600.1 Wheat cytosol, peroxisome, plasma membrane 73.51 74.44
CDX99621 Canola mitochondrion 56.17 74.04
TraesCS6D01G212500.1 Wheat peroxisome 73.09 74.02
CDY18463 Canola peroxisome 26.77 73.38
Solyc10g011930.1.1 Tomato cytosol 12.9 73.23
AT5G04230.2 Thale cress peroxisome 70.74 73.07
Os02t0626600-00 Rice plasma membrane 72.4 73.01
CDY13306 Canola peroxisome 20.94 71.9
Zm00001d029015_P001 Maize peroxisome 39.39 71.36
TraesCS2B01G398300.2 Wheat peroxisome 36.34 71.2
Solyc10g011920.1.1 Tomato cytosol 12.48 70.87
Os04t0518100-01 Rice plasma membrane 69.49 70.86
Os02t0626100-01 Rice extracellular, plasma membrane 68.79 70.76
TraesCS2B01G020100.1 Wheat peroxisome 66.71 70.63
EES12521 Sorghum cytosol 68.79 70.55
Bra030322.1-P Field mustard cytosol, peroxisome, plastid 68.24 70.49
CDY15917 Canola cytosol, peroxisome, plastid 68.1 70.34
HORVU2Hr1G089440.9 Barley plasma membrane 74.76 70.27
Zm00001d017274_P001 Maize plasma membrane 68.38 70.13
TraesCS6D01G212200.1 Wheat extracellular, golgi, unclear 68.38 70.03
TraesCS6B01G258400.2 Wheat cytosol, peroxisome, plastid 68.24 69.89
TraesCS3B01G027800.1 Wheat mitochondrion 52.7 69.85
EES07174 Sorghum cytosol, peroxisome, plastid 67.96 69.6
Zm00001d051161_P003 Maize plastid 67.82 69.56
HORVU2Hr1G038140.1 Barley mitochondrion, plastid 69.49 69.29
Zm00001d033286_P001 Maize peroxisome 66.44 68.62
Os12t0520200-01 Rice plasma membrane 64.08 67.94
TraesCS3D01G016300.1 Wheat peroxisome 63.94 66.91
EER93773 Sorghum peroxisome 65.46 66.57
TraesCS3B01G053900.1 Wheat peroxisome 63.52 66.47
HORVU3Hr1G005330.2 Barley cytosol, peroxisome, plasma membrane 63.52 66.38
Zm00001d027249_P001 Maize peroxisome 20.53 66.37
Zm00001d020933_P001 Maize mitochondrion 19.42 66.35
TraesCS3D01G016500.1 Wheat peroxisome 62.0 64.88
Zm00001d003016_P001 Maize plastid 69.21 63.24
HORVU6Hr1G058820.2 Barley mitochondrion 62.14 63.19
Zm00001d053619_P001 Maize mitochondrion 35.23 60.05
Zm00001d051164_P001 Maize peroxisome 12.9 59.24
GSMUA_Achr9P15990_001 Banana peroxisome 55.89 57.33
CDY61769 Canola peroxisome 18.86 53.75
Bra028793.1-P Field mustard peroxisome 21.78 53.4
HORVU2Hr1G062750.1 Barley mitochondrion 13.59 53.26
Os12t0461300-00 Rice plastid 17.06 48.62
Os08t0308300-00 Rice plastid 10.54 40.43
Protein Annotations
KEGG:00360+4.3.1.24KEGG:00940+4.3.1.24Gene3D:1.10.274.20Gene3D:1.10.275.10Gene3D:1.20.200.10MapMan:9.2.1.1.1
InterPro:Aromatic_LyaseInterPro:Fumarase/histidase_NGO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006559GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009058GO:GO:0009698GO:GO:0009800GO:GO:0009987GO:GO:0016829GO:GO:0016841
GO:GO:0019748GO:GO:0045548InterPro:IPR023144InterPro:IPR024083UniProt:K4CQH9InterPro:L-Aspartase-like
PFAM:PF00221ScanProsite:PS00488PANTHER:PTHR10362PANTHER:PTHR10362:SF32InterPro:Phe/His_NH3-lyase_ASInterPro:Phe_NH3-lyase
InterPro:Phe_NH3-lyase_shielding_dom_sfSUPFAM:SSF48557EnsemblPlantsGene:Solyc09g007900.2EnsemblPlants:Solyc09g007900.2.1TIGRFAMs:TIGR01226UniParc:UPI000276BB03
Description
Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:K4CQH9]
Coordinates
chr9:-:1419041..1422226
Molecular Weight (calculated)
78360.1 Da
IEP (calculated)
6.720
GRAVY (calculated)
-0.180
Length
721 amino acids
Sequence
(BLAST)
001: MASSIVQNGH VNGEAMDLCK KSINVNDPLN WEMAAESLRG SHLDEVKKMV DEFRKPIVKL GGETLTVAQV ASIANVDNKS NGVKVELSES ARAGVKASSD
101: WVMDSMGKGT DSYGVTTGFG ATSHRRTKNG GALQKELIRF LNAGVFGNGT ESSHTLPHSA TRAAMLVRIN TLLQGYSGIR FEILEAITKL INSNITPCLP
201: LRGTITASGD LVPLSYIAGL LTGRPNSKAV GPNGEKLNAE EAFRVAGVTS GFFELQPKEG LALVNGTAVG SGMASMVLFE SNILAVMSEV LSAIFAEVMN
301: GKPEFTDYLT HKLKHHPGQI EAAAIMEHIL DGSSYVKAAQ KLHEMDPLQK PKQDRYALRT SPQWLGPQIE VIRAATKMIE REINSVNDNP LIDVSRNKAL
401: HGGNFQGTPI GVSMDNTRLA LASIGKLMFA QFSELVNDYY NNGLPSNLTA GRNPSLDYGL KGAEIAMASY CSELQFLANP VTNHVQSAEQ HNQDVNSLGL
501: ISARKTAEAV DILKLMSSTY LVALCQAIDL RHLEENLRSA VKNTVSQVAK RTLTMGANGE LHPARFCEKE LLRVVDREYV FAYADDPCSS TYPLMQKLRQ
601: VLVDHAMKNG ESEKNVNSSI FQKIVAFEDE LKAALPKEVE SARAVVESGN PAIPNRITEC RSYPLYRLVR QELGSELLTG EKVRSPGEEI DKVFTAMCNG
701: QIIDPLLECL KSWNGAPLPI C
Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
Arabidopsis Description
PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.