Factsheet for GSMUA_Achr11P16380_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
vacuole 1
peroxisome 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09070_001
GSMUA_Achr2P00240_001
GSMUA_Achr5P03950_001
GSMUA_Achr5P18560_001
GSMUA_Achr8P18960_001
GSMUA_Achr9P15990_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	GSMUA_Achr11P...	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr11P...	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr1P09070_001	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr2P00240_001	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr5P03950_001	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr5P18560_001	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr8P18960_001	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr9P15990_001	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr11P...	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr11P...	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr1P09070_001	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr2P00240_001	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr5P03950_001	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr5P18560_001	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr8P18960_001	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr9P15990_001	AT3G10340.1	21798944
AT3G10340.1	GSMUA_AchrUn_...	AT1G15670.1	21798944
AT3G53260.1	GSMUA_Achr11P...	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr11P...	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr1P09070_001	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr2P00240_001	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr5P03950_001	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr5P18560_001	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr8P18960_001	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr9P15990_001	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr11P...	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr11P...	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr1P09070_001	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr2P00240_001	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr5P03950_001	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr5P18560_001	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr8P18960_001	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr9P15990_001	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P18960_001	Banana	cytosol, peroxisome, plastid	81.18	86.86
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	87.71	86.11
GSMUA_Achr2P00240_001	Banana	peroxisome	87.25	85.91
GSMUA_Achr5P18560_001	Banana	cytosol, peroxisome, plastid	86.0	84.82
GSMUA_Achr5P03950_001	Banana	cytosol, peroxisome, plastid	83.51	82.49
GSMUA_Achr1P09070_001	Banana	peroxisome	82.12	80.73
Solyc03g036480.1.1	Tomato	peroxisome	12.44	78.43
Solyc03g036470.1.1	Tomato	mitochondrion	27.84	78.17
CDX67566	Canola	cytosol	55.68	72.91
CDX78161	Canola	cytosol	56.14	72.78
CDX73567	Canola	cytosol	56.14	72.78
CDY66761	Canola	cytosol, peroxisome, plastid	58.63	72.64
CDX76219	Canola	cytosol	58.48	72.03
PGSC0003DMT400080765	Potato	peroxisome	48.06	71.03
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	15.86	70.34
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	77.45	70.04
CDY18464	Canola	peroxisome	46.03	69.98
Solyc03g042560.1.1	Tomato	peroxisome	50.7	69.96
Solyc10g086180.1.1	Tomato	extracellular	76.98	69.62
AT3G10340.1	Thale cress	peroxisome	76.52	69.59
Solyc09g007920.2.1	Tomato	extracellular, nucleus	77.92	69.49
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	77.92	69.49
CDY00922	Canola	cytosol	76.21	69.41
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	77.61	69.4
Solyc09g007910.2.1	Tomato	extracellular, nucleus	77.61	69.21
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	73.87	69.14
CDY08611	Canola	cytosol	75.89	69.12
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	77.61	69.11
Bra029831.1-P	Field mustard	cytosol	75.74	68.98
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	73.87	68.94
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	77.29	68.84
Solyc09g007890.1.1	Tomato	plastid	76.67	68.57
KRG91925	Soybean	cytosol, peroxisome, plastid	76.21	68.34
Bra039777.1-P	Field mustard	peroxisome	54.12	68.24
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	76.83	68.14
Bra003126.1-P	Field mustard	cytosol	74.81	68.03
PGSC0003DMT400055489	Potato	mitochondrion	41.37	68.03
AT3G53260.1	Thale cress	cytosol	75.12	67.36
Bra006985.1-P	Field mustard	cytosol	72.94	66.43
CDX99621	Canola	mitochondrion	56.45	66.36
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	36.7	64.66
AT5G04230.2	Thale cress	peroxisome	69.98	64.47
CDY15917	Canola	cytosol, peroxisome, plastid	68.9	63.47
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	68.58	63.18
Solyc03g078280.1.1	Tomato	peroxisome	25.19	62.79
CDY18463	Canola	peroxisome	25.66	62.74
CDY13306	Canola	peroxisome	20.06	61.43
Bra005221.1-P	Field mustard	peroxisome	32.97	57.14
CDX91331	Canola	peroxisome	32.81	55.53
CDX74991	Canola	peroxisome	32.81	55.53
Solyc03g071870.1.1	Tomato	peroxisome	14.77	55.23
GSMUA_Achr9P15990_001	Banana	peroxisome	59.41	54.34
Solyc10g011920.1.1	Tomato	cytosol	10.73	54.33
Solyc10g011930.1.1	Tomato	cytosol	10.73	54.33
CDY61769	Canola	peroxisome	19.13	48.62
Bra028793.1-P	Field mustard	peroxisome	20.06	43.88
PGSC0003DMT400055529	Potato	cytosol	11.35	43.71

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.275.10	Gene3D:1.20.200.10	MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase
InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748
GO:GO:0045548	EnsemblPlantsGene:GSMUA_Achr11G16380_001	EnsemblPlants:GSMUA_Achr11P16380_001	EnsemblPlants:GSMUA_Achr11T16380_001	InterPro:IPR024083	InterPro:L-Aspartase-like
UniProt:M0RSR8	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF32	InterPro:Phe/His_NH3-lyase_AS
InterPro:Phe_NH3-lyase	SUPFAM:SSF48557	TIGRFAMs:TIGR01226	UniParc:UPI000294C3EE	SEG:seg	:

Description

Phenylalanine ammonia-lyase 3 [Source:GMGC_GENE;Acc:GSMUA_Achr11G16380_001]

Coordinates

chr11:+:18089305..18091484

Molecular Weight (calculated)

69716.7 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.084

Length

643 amino acids

Sequence
(BLAST)

001: MEVENGAAGG LRVETDPLNW AAAAEALAGS HLDEVRRMTW EFRQPLVKLE GSTLRISQVA AIAAGAHSAV RVELSESARD EVCASSRWVV DSTAKGTNSN
101: GMTAGFGAAS HRRTKEGGAL QKELIRFLNV GIFGSGAESG HTLPPSATRA AMLVRINTLL QGYSGIRFEI LEAMASLLNS GITPCLPLRG TITASGDLVP
201: LSYIAGVLTG RPNAKACDPA GETMDAAEAF RRAGIPHEFF ELQPKEGLAL VNGTTVGSGL ASVVLYEANV LALLAEVLSA VFCEVMQGNP EFTDHLTHRL
301: KHHPGQIEAA AIMEHILDGS SYMKMAKKLH EQDPLQKPKK DRYALRTSPQ WLGPQIEVIR SSTKSIEREI NSVNDNPLID VARNKTIYGG NFQGTPIGVS
401: MDNARLALAA VGKLMFAQFS ELVNDLYNNG LPSNLSGGRN PSLDYGFKGA EIAMAAYCSE LQFLANPVTN HVQSAEQHNQ DVNSLGFISS RKAAEAVDIL
501: KLMSATYLLA LCQAIDLRHL EENLKNAVKN TVSQVAKRVL TTGAFCEKNL ITVADREHIF GYIDDPCSST YALMPKLRMA LCRSYPLYRF VREELGTEYL
601: TGEKVRSPGE EFDKVFVAID RGLVIDPLLE CLKEWNGVPL PMC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.