Factsheet for PGSC0003DMT400055488

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006583
PGSC0003DMT400006584
PGSC0003DMT400042650
PGSC0003DMT400042651
PGSC0003DMT400042652
PGSC0003DMT400049886
PGSC0003DMT400055488
PGSC0003DMT400055489
PGSC0003DMT400055529
PGSC0003DMT400055531
PGSC0003DMT400080548
PGSC0003DMT400080765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	PGSC0003DMT400049886	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400055488	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400055489	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400055529	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400055531	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400080548	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400080765	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400049886	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400055488	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400055489	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400055529	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400055531	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400080548	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400080765	AT3G10340.1	21798944
AT3G10340.1	PGSC0003DMT400006583	AT1G15670.1	21798944
AT3G10340.1	PGSC0003DMT400006584	AT1G15670.1	21798944
AT3G10340.1	PGSC0003DMT400042650	AT1G15670.1	21798944
AT3G10340.1	PGSC0003DMT400042651	AT1G15670.1	21798944
AT3G10340.1	PGSC0003DMT400042652	AT1G15670.1	21798944
AT3G53260.1	PGSC0003DMT400049886	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400055488	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400055489	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400055529	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400055531	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400080548	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400080765	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400049886	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400055488	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400055489	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400055529	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400055531	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400080548	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400080765	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	96.4	96.8
PGSC0003DMT400080765	Potato	peroxisome	57.06	94.71
PGSC0003DMT400055489	Potato	mitochondrion	50.42	93.09
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	86.29	90.42
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	88.64	90.01
PGSC0003DMT400055529	Potato	cytosol	20.78	89.82
CDY18464	Canola	peroxisome	49.58	84.63
GSMUA_Achr5P03950_001	Banana	cytosol, peroxisome, plastid	74.79	82.95
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	80.75	82.46
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	78.39	82.39
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	82.13	82.02
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	81.72	81.72
GSMUA_Achr1P09070_001	Banana	peroxisome	73.96	81.65
CDX78161	Canola	cytosol	55.68	81.05
AT3G10340.1	Thale cress	peroxisome	79.09	80.76
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	73.27	80.76
KRG91925	Soybean	cytosol, peroxisome, plastid	80.19	80.75
CDY66761	Canola	cytosol, peroxisome, plastid	58.03	80.73
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	81.02	80.69
CDX73567	Canola	cytosol	55.4	80.65
GSMUA_Achr8P18960_001	Banana	cytosol, peroxisome, plastid	67.04	80.53
GSMUA_Achr5P18560_001	Banana	cytosol, peroxisome, plastid	72.71	80.52
GSMUA_Achr2P00240_001	Banana	peroxisome	72.44	80.09
Bra003126.1-P	Field mustard	cytosol	78.39	80.06
CDX67566	Canola	cytosol	54.43	80.04
Bra029831.1-P	Field mustard	cytosol	78.25	80.03
CDY08611	Canola	cytosol	78.25	80.03
AT3G53260.1	Thale cress	cytosol	79.22	79.78
CDX76219	Canola	cytosol	57.62	79.69
CDY00922	Canola	cytosol	77.56	79.32
Bra006985.1-P	Field mustard	cytosol	76.73	78.47
TraesCS2B01G398100.1	Wheat	cytosol, peroxisome, plastid	56.37	78.27
GSMUA_Achr11P...	Banana	peroxisome	69.11	77.61
TraesCS1D01G039300.1	Wheat	mitochondrion	56.51	77.42
TraesCS2D01G204400.1	Wheat	peroxisome	71.19	76.95
Bra039777.1-P	Field mustard	peroxisome	54.02	76.47
TraesCS2D01G377600.1	Wheat	plastid	74.79	76.16
Bra005221.1-P	Field mustard	peroxisome	39.06	76.01
Zm00001d017276_P001	Maize	peroxisome	74.1	75.99
TraesCS2B01G398000.2	Wheat	plastid	74.93	75.88
TraesCS2D01G377200.1	Wheat	cytosol, peroxisome, plastid	74.93	75.88
Zm00001d003015_P001	Maize	peroxisome	75.07	75.8
HORVU2Hr1G089540.1	Barley	peroxisome	49.17	75.69
HORVU2Hr1G038120.1	Barley	cytosol, peroxisome, plastid	74.1	75.67
EES05455	Sorghum	cytosol, peroxisome, plastid	74.79	75.63
EES07176	Sorghum	cytosol, peroxisome, plastid	74.79	75.63
EES07177	Sorghum	cytosol, peroxisome, plastid	74.79	75.63
Os02t0626400-01	Rice	mitochondrion, plasma membrane	75.21	75.63
TraesCS1B01G122800.1	Wheat	cytosol, peroxisome, plastid	74.1	75.56
HORVU1Hr1G022060.1	Barley	cytosol, peroxisome, plastid	73.96	75.53
TraesCS2D01G204700.1	Wheat	peroxisome	73.96	75.53
Os04t0518400-01	Rice	extracellular, plasma membrane	74.65	75.49
TraesCS2B01G398200.1	Wheat	cytosol, peroxisome, plastid	74.52	75.46
TraesCS2D01G377500.1	Wheat	cytosol, peroxisome, plastid	74.52	75.46
TraesCS1D01G103500.1	Wheat	cytosol, peroxisome, plastid	73.96	75.42
TraesCS1B01G048400.2	Wheat	cytosol, peroxisome, plastid	73.82	75.39
TraesCS5B01G468400.1	Wheat	peroxisome	57.62	75.36
TraesCS2B01G224300.1	Wheat	cytosol, peroxisome, plastid	73.68	75.35
TraesCS2B01G398400.1	Wheat	cytosol, peroxisome, plastid	74.38	75.32
TraesCS2D01G377400.1	Wheat	cytosol, peroxisome, plastid	74.38	75.32
TraesCS2B01G224000.1	Wheat	peroxisome	73.68	75.25
TraesCS2D01G218700.1	Wheat	peroxisome	73.68	75.25
TraesCS5B01G468300.1	Wheat	cytosol, peroxisome, plastid	73.68	75.25
Os02t0627100-01	Rice	plasma membrane	74.24	75.18
HORVU6Hr1G058840.1	Barley	cytosol, peroxisome, plasma membrane	74.1	75.14
TraesCS1D01G039400.1	Wheat	golgi	73.55	75.11
Zm00001d017279_P001	Maize	cytosol, peroxisome, plastid	74.38	75.1
OQU81984	Sorghum	peroxisome	74.24	75.07
TraesCS1B01G048100.1	Wheat	cytosol, peroxisome, plastid	74.24	75.07
TraesCS1D01G039500.1	Wheat	cytosol, peroxisome, plastid	74.24	75.07
TraesCS6B01G258500.1	Wheat	extracellular, unclear	74.24	75.07
TraesCS1B01G048300.1	Wheat	cytosol, peroxisome, plastid	74.1	75.04
HORVU0Hr1G016330.1	Barley	cytosol, peroxisome, plastid	74.24	74.97
EES07175	Sorghum	cytosol, peroxisome, plastid	74.52	74.93
Zm00001d051163_P002	Maize	peroxisome	74.52	74.93
TraesCS1B01G048500.1	Wheat	cytosol, peroxisome, plastid	74.1	74.93
Zm00001d017275_P001	Maize	extracellular	74.52	74.83
TraesCS1B01G048200.1	Wheat	cytosol, peroxisome, plastid	73.96	74.79
TraesCS6D01G212400.1	Wheat	cytosol, peroxisome, plastid	73.96	74.79
CDX74991	Canola	peroxisome	39.34	74.74
CDX91331	Canola	peroxisome	39.34	74.74
Os05t0427400-00	Rice	cytosol, peroxisome, plastid	74.1	74.72
TraesCS6B01G258600.1	Wheat	cytosol, peroxisome, plasma membrane	73.68	74.72
Zm00001d051166_P001	Maize	extracellular	73.82	74.44
TraesCS6D01G212500.1	Wheat	peroxisome	73.27	74.3
CDX99621	Canola	mitochondrion	56.23	74.22
AT5G04230.2	Thale cress	peroxisome	70.78	73.21
CDY18463	Canola	peroxisome	26.59	73.0
Os02t0626600-00	Rice	plasma membrane	71.88	72.59
Zm00001d029015_P001	Maize	peroxisome	39.75	72.11
TraesCS2B01G398300.2	Wheat	peroxisome	36.7	72.01
Os04t0518100-01	Rice	plasma membrane	70.22	71.71
Os02t0626100-01	Rice	extracellular, plasma membrane	69.53	71.61
Zm00001d017274_P001	Maize	plasma membrane	69.67	71.55
TraesCS6D01G212200.1	Wheat	extracellular, golgi, unclear	69.67	71.45
CDY13306	Canola	peroxisome	20.78	71.43
TraesCS6B01G258400.2	Wheat	cytosol, peroxisome, plastid	69.53	71.31
EES12521	Sorghum	cytosol	69.25	71.12
PGSC0003DMT400014003	Potato	peroxisome	65.65	71.06
EES07174	Sorghum	cytosol, peroxisome, plastid	69.25	71.02
Zm00001d051161_P003	Maize	plastid	69.11	70.98
TraesCS2B01G020100.1	Wheat	peroxisome	66.9	70.93
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	68.28	70.63
CDY15917	Canola	cytosol, peroxisome, plastid	68.14	70.49
HORVU2Hr1G089440.9	Barley	plasma membrane	74.79	70.4
TraesCS3B01G027800.1	Wheat	mitochondrion	52.91	70.22
HORVU2Hr1G038140.1	Barley	mitochondrion, plastid	69.39	69.29
Zm00001d033286_P001	Maize	peroxisome	66.2	68.48
Os12t0520200-01	Rice	plasma membrane	63.85	67.79
TraesCS3D01G016300.1	Wheat	peroxisome	64.54	67.63
HORVU3Hr1G005330.2	Barley	cytosol, peroxisome, plasma membrane	64.4	67.39
TraesCS3B01G053900.1	Wheat	peroxisome	64.27	67.34
Zm00001d027249_P001	Maize	peroxisome	20.64	66.82
EER93773	Sorghum	peroxisome	65.37	66.57
Zm00001d020933_P001	Maize	mitochondrion	19.39	66.35
TraesCS3D01G016500.1	Wheat	peroxisome	62.6	65.6
HORVU6Hr1G058820.2	Barley	mitochondrion	62.88	64.03
Zm00001d003016_P001	Maize	plastid	69.94	64.01
Zm00001d053619_P001	Maize	mitochondrion	35.73	60.99
Zm00001d051164_P001	Maize	peroxisome	13.02	59.87
GSMUA_Achr9P15990_001	Banana	peroxisome	56.09	57.61
CDY61769	Canola	peroxisome	18.84	53.75
Bra028793.1-P	Field mustard	peroxisome	21.75	53.4
HORVU2Hr1G062750.1	Barley	mitochondrion	13.43	52.72
Os12t0461300-00	Rice	plastid	16.76	47.83
Os08t0308300-00	Rice	plastid	10.39	39.89

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:102596343
MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829
GO:GO:0016841	GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like
UniProt:M1BY02	PFAM:PF00221	EnsemblPlantsGene:PGSC0003DMG401021549	PGSC:PGSC0003DMG401021549	EnsemblPlants:PGSC0003DMT400055488	ScanProsite:PS00488
PANTHER:PTHR10362	PANTHER:PTHR10362:SF32	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557
TIGRFAMs:TIGR01226	UniParc:UPI000296471F	RefSeq:XP_006354339.1	:	:	:

Description

Phenylalanine ammonia-lyase [Source:PGSC_GENE;Acc:PGSC0003DMG401021549]

Coordinates

chr9:-:5510117..5512923

Molecular Weight (calculated)

78493.2 Da

IEP (calculated)

6.416

GRAVY (calculated)

-0.155

Length

722 amino acids

Sequence
(BLAST)

001: MASIAQNGHV NGEVVAMELC KKSINVDDPL NWEMAADSLR GSHLDEVKKM VAEFRKPIVK LGGETLTVAQ VASIANADNK SNGVKVELSE SARAGVKASS
101: DWVMDSMSKG TDSYGVTTGF GATSHRRTKN GGALQKELIR FLNAGVFGNG TESSHTLPHS ATRAAMLVRI NTLLQGYSGI RFEILEAITK LINSNITPCL
201: PLRGTITASG DLVPLSYIAG LLTGRPNSKA VGPNGEKLNA EEAFCAAGVS GGFFELQPKE GLALVNGTAV GSGMASMVLF DSNILAVMSE VLSAIFAEVM
301: NGKPEFTDYL THKLKHHPGQ IEAAAIMEHI LDGSSYVKEA QKLHEMDPLQ KPKQDRYALR TSPQWLGPQI EVIRAATKMI EREINSVNDN PLIDVSRNKA
401: LHGGNFQGTP IGVSMDNTRL ALASIGKLMF AQFSELVNDY YNNGLPSNLT AGRNPSLDYG FKGAEIAMAS YCSELQFLAN PVTNHVQSAE QHNQDVNSLG
501: LISARKTAEA VDILKLMSST YLVALCQAID LRHLEENLKN AVKNTVSQVA KKTLTMGANG ELHPARFCEK ELLQVVEREY LFTYADDPCS CTYPLMQKLR
601: QVLVDHAMKN GESESNVNSS IFQKIVAFED ELKAVLPKEV ESARVVLESG NPVIPNRITE CRSYPLYRFV RKELGTEVLT GEKIRSPGEE IDKVFTAFCN
701: GQIIDPLLEC LKSWNGAPLP IC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.