CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
vacuole 1
peroxisome 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88591
EER93773
EES05455
EES06499
EES07174
EES07175
EES07176
EES07177
EES12521
OQU81984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	EER93773	AT2G37040.1	21798944
AT2G37040.1	EES05455	AT2G37040.1	21798944
AT2G37040.1	EES07174	AT2G37040.1	21798944
AT2G37040.1	EES07175	AT2G37040.1	21798944
AT2G37040.1	EES07176	AT2G37040.1	21798944
AT2G37040.1	EES07177	AT2G37040.1	21798944
AT2G37040.1	EES12521	AT2G37040.1	21798944
AT2G37040.1	OQU81984	AT2G37040.1	21798944
AT2G37040.1	EER93773	AT3G10340.1	21798944
AT2G37040.1	EES05455	AT3G10340.1	21798944
AT2G37040.1	EES07174	AT3G10340.1	21798944
AT2G37040.1	EES07175	AT3G10340.1	21798944
AT2G37040.1	EES07176	AT3G10340.1	21798944
AT2G37040.1	EES07177	AT3G10340.1	21798944
AT2G37040.1	EES12521	AT3G10340.1	21798944
AT2G37040.1	OQU81984	AT3G10340.1	21798944
AT3G10340.1	EER88591	AT1G15670.1	21798944
AT3G10340.1	EES06499	AT1G15670.1	21798944
AT3G53260.1	EER93773	AT3G10340.1	21798944
AT3G53260.1	EES05455	AT3G10340.1	21798944
AT3G53260.1	EES07174	AT3G10340.1	21798944
AT3G53260.1	EES07175	AT3G10340.1	21798944
AT3G53260.1	EES07176	AT3G10340.1	21798944
AT3G53260.1	EES07177	AT3G10340.1	21798944
AT3G53260.1	EES12521	AT3G10340.1	21798944
AT3G53260.1	OQU81984	AT3G10340.1	21798944
AT3G53260.1	EER93773	AT3G53260.1	21798944
AT3G53260.1	EES05455	AT3G53260.1	21798944
AT3G53260.1	EES07174	AT3G53260.1	21798944
AT3G53260.1	EES07175	AT3G53260.1	21798944
AT3G53260.1	EES07176	AT3G53260.1	21798944
AT3G53260.1	EES07177	AT3G53260.1	21798944
AT3G53260.1	EES12521	AT3G53260.1	21798944
AT3G53260.1	OQU81984	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033286_P001	Maize	peroxisome	88.72	90.11
Os12t0520200-01	Rice	plasma membrane	85.75	89.41
OQU81984	Sorghum	peroxisome	75.32	74.79
EES07175	Sorghum	cytosol, peroxisome, plastid	75.32	74.37
EES07177	Sorghum	cytosol, peroxisome, plastid	73.62	73.11
EES07176	Sorghum	cytosol, peroxisome, plastid	73.62	73.11
EES05455	Sorghum	cytosol, peroxisome, plastid	73.62	73.11
Solyc03g036480.1.1	Tomato	peroxisome	10.44	72.55
Solyc03g036470.1.1	Tomato	mitochondrion	22.85	70.74
CDY18464	Canola	peroxisome	40.76	68.32
PGSC0003DMT400080765	Potato	peroxisome	41.61	67.82
CDX67566	Canola	cytosol	46.83	67.62
Solyc03g042560.1.1	Tomato	peroxisome	44.43	67.6
EES07174	Sorghum	cytosol, peroxisome, plastid	67.0	67.47
PGSC0003DMT400055489	Potato	mitochondrion	37.09	67.26
EES12521	Sorghum	cytosol	66.15	66.71
CDX78161	Canola	cytosol	46.54	66.53
CDX73567	Canola	cytosol	46.4	66.33
Solyc10g086180.1.1	Tomato	extracellular	66.29	66.1
CDY66761	Canola	cytosol, peroxisome, plastid	48.38	66.09
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	66.15	65.96
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	63.75	65.79
Solyc09g007920.2.1	Tomato	extracellular, nucleus	66.71	65.6
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	63.75	65.6
Solyc09g007910.2.1	Tomato	extracellular, nucleus	66.57	65.46
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	66.57	65.46
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	66.57	65.37
Bra003126.1-P	Field mustard	cytosol	65.16	65.35
AT3G10340.1	Thale cress	peroxisome	65.16	65.35
CDX76219	Canola	cytosol	48.1	65.33
Bra029831.1-P	Field mustard	cytosol	65.02	65.3
CDY08611	Canola	cytosol	64.88	65.16
CDY00922	Canola	cytosol	64.88	65.16
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	65.87	64.95
KRG91925	Soybean	cytosol, peroxisome, plastid	65.59	64.85
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	66.01	64.82
Solyc03g078280.1.1	Tomato	peroxisome	23.55	64.73
AT3G53260.1	Thale cress	cytosol	65.16	64.44
CDX99621	Canola	mitochondrion	49.51	64.17
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	65.59	64.14
Solyc09g007890.1.1	Tomato	plastid	64.46	63.56
Bra006985.1-P	Field mustard	cytosol	63.05	63.31
Bra039777.1-P	Field mustard	peroxisome	45.42	63.14
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	32.3	62.74
AT5G04230.2	Thale cress	peroxisome	61.5	62.46
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	12.55	61.38
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	60.23	61.17
CDY15917	Canola	cytosol, peroxisome, plastid	59.94	60.89
CDY18463	Canola	peroxisome	20.45	55.13
Bra005221.1-P	Field mustard	peroxisome	28.49	54.45
CDY13306	Canola	peroxisome	15.8	53.33
CDX91331	Canola	peroxisome	28.35	52.89
CDX74991	Canola	peroxisome	28.35	52.89
VIT_11s0016g01640.t01	Wine grape	peroxisome	49.51	52.78
PGSC0003DMT400055529	Potato	cytosol	12.41	52.69
GSMUA_Achr9P15990_001	Banana	peroxisome	51.9	52.35
Solyc03g071870.1.1	Tomato	peroxisome	12.27	50.58
CDY61769	Canola	peroxisome	16.93	47.43
Bra028793.1-P	Field mustard	peroxisome	19.32	46.6
Solyc10g011930.1.1	Tomato	cytosol	8.18	45.67
VIT_11s0016g01520.t01	Wine grape	peroxisome	56.7	44.92
Solyc10g011920.1.1	Tomato	cytosol	7.9	44.09
VIT_11s0016g01660.t01	Wine grape	peroxisome	10.01	40.8
VIT_11s0016g01510.t01	Wine grape	peroxisome	12.41	24.79

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:8062467
MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase	UniProt:C5WS41	EnsemblPlants:EER93773	ProteinID:EER93773	ProteinID:EER93773.1
InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748
GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	PFAM:PF00221	ScanProsite:PS00488
PANTHER:PTHR10362	PANTHER:PTHR10362:SF20	MetaCyc:PWY-1121	MetaCyc:PWY-5883	MetaCyc:PWY-6444	MetaCyc:PWY-6457
InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	EnsemblPlantsGene:SORBI_3001G160500	SUPFAM:SSF48557	TIGRFAMs:TIGR01226
UniParc:UPI0001A82B84	RefSeq:XP_002466775.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:13186392..13188966

Molecular Weight (calculated)

76245.5 Da

IEP (calculated)

5.670

GRAVY (calculated)

-0.020

Length

709 amino acids

Sequence
(BLAST)

001: MECETGLVDR PRRNGSAGPH VVDDDPLKWG KAAEDLTGSH LDDVRRMVEE YRMPLVKIDG AMLSVAKVAA VAGEATRRVQ VVLDESARPR LEASREWVFD
101: STMNGTDTYG VTTGFGGASH RRTKEFRALQ TELIRYLNAG VFGASSSDGY TLPAEVTRAA MLVRINTLTQ GYSGIRFEIL EAIAKLLNAN VTPCLPLRGS
201: ITASGDLVPL SYIAGLITGR GNSAAVAPDG TKVGAAEAFR IAGIDHGFFA LEPKEGLAIV NGTAVGSGLA AIVLFEANVL AVLAEVLSAV YCEVMAGNPE
301: YTDHLIHALK HHPGQIEAAA IMEHVLEGSS YMKLAREQAE LDPLTKPKQD RYAIRTTPQW LGPQVEVIRF ATKSIEREIN SVNDNPVIDV ARGKALHGGN
401: FQGTPVGVSM DNTRLAVAAI GKLMFAQFTE LVSSFYSNGL PSNLSGGRDP SLDYGFNGAE VAMASYCSEL QFLANPVTNH VQTAEQHNQS VNSLGLISSR
501: MTAEAVTILK LMSSTFLIAL CQAIDLRQLE ESIKAAVKKC VARVAKKCLA MDDDAAAAAA QLLGAVDRVA VFTYAEDPCR PSLPLMQKLR VVLMEHALGA
601: AEGAVETTSI LAKVAEFEQQ LRAVLPDEVE AARAAVESGT APKRIAECRS YPLYRFVREE LGAEYLTGEK TRSPGEEVDK VVIAMNQRKH IDPLLECLSD
701: WKGAPLHAT

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.