Factsheet for Solyc10g086180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g036470.1.1
Solyc03g036480.1.1
Solyc03g042560.1.1
Solyc03g071860.2.1
Solyc03g071870.1.1
Solyc03g078270.1.1
Solyc03g078280.1.1
Solyc03g120320.1.1
Solyc03g120330.1.1
Solyc06g066770.1.1
Solyc09g007890.1.1
Solyc09g007900.2.1
Solyc09g007910.2.1
Solyc09g007920.2.1
Solyc10g011920.1.1
Solyc10g011930.1.1
Solyc10g086180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	Solyc03g036470.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g036480.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g042560.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g071860.2.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g071870.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g078270.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g078280.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc09g007890.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc09g007900.2.1	AT2G37040.1	21798944
AT2G37040.1	Solyc09g007910.2.1	AT2G37040.1	21798944
AT2G37040.1	Solyc09g007920.2.1	AT2G37040.1	21798944
AT2G37040.1	Solyc10g011920.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc10g011930.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc10g086180.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g036470.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g036480.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g042560.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g071860.2.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g071870.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g078270.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g078280.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc09g007890.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc09g007900.2.1	AT3G10340.1	21798944
AT2G37040.1	Solyc09g007910.2.1	AT3G10340.1	21798944
AT2G37040.1	Solyc09g007920.2.1	AT3G10340.1	21798944
AT2G37040.1	Solyc10g011920.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc10g011930.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc10g086180.1.1	AT3G10340.1	21798944
AT3G10340.1	Solyc03g120320.1.1	AT1G15670.1	21798944
AT3G10340.1	Solyc03g120330.1.1	AT1G15670.1	21798944
AT3G10340.1	Solyc06g066770.1.1	AT1G15670.1	21798944
AT3G53260.1	Solyc03g036470.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g036480.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g042560.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g071860.2.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g071870.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g078270.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g078280.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc09g007890.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc09g007900.2.1	AT3G10340.1	21798944
AT3G53260.1	Solyc09g007910.2.1	AT3G10340.1	21798944
AT3G53260.1	Solyc09g007920.2.1	AT3G10340.1	21798944
AT3G53260.1	Solyc10g011920.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc10g011930.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc10g086180.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g036470.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g036480.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g042560.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g071860.2.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g071870.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g078270.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g078280.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc09g007890.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc09g007900.2.1	AT3G53260.1	21798944
AT3G53260.1	Solyc09g007910.2.1	AT3G53260.1	21798944
AT3G53260.1	Solyc09g007920.2.1	AT3G53260.1	21798944
AT3G53260.1	Solyc10g011920.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc10g011930.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc10g086180.1.1	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	98.45	98.45
Solyc03g036470.1.1	Tomato	mitochondrion	28.97	89.96
Solyc09g007920.2.1	Tomato	extracellular, nucleus	89.31	88.07
Solyc03g042560.1.1	Tomato	peroxisome	57.67	87.98
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	89.17	87.93
Solyc09g007910.2.1	Tomato	extracellular, nucleus	88.61	87.38
Solyc03g036480.1.1	Tomato	peroxisome	12.52	87.25
Solyc09g007890.1.1	Tomato	plastid	86.78	85.81
CDY18464	Canola	peroxisome	49.93	83.92
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	80.73	83.55
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	82.14	82.37
Solyc03g078280.1.1	Tomato	peroxisome	29.82	82.17
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	83.54	82.16
KRG91925	Soybean	cytosol, peroxisome, plastid	82.14	81.45
GSMUA_Achr5P03950_001	Banana	cytosol, peroxisome, plastid	74.54	81.41
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	41.77	81.37
GSMUA_Achr1P09070_001	Banana	peroxisome	74.4	80.89
Bra003126.1-P	Field mustard	cytosol	80.31	80.76
AT3G10340.1	Thale cress	peroxisome	80.03	80.48
GSMUA_Achr8P18960_001	Banana	cytosol, peroxisome, plastid	67.93	80.37
CDX78161	Canola	cytosol	55.84	80.04
CDX67566	Canola	cytosol	55.13	79.84
GSMUA_Achr2P00240_001	Banana	peroxisome	73.28	79.79
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	81.01	79.78
CDX73567	Canola	cytosol	55.56	79.64
CDY66761	Canola	cytosol, peroxisome, plastid	58.09	79.58
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	73.14	79.39
AT3G53260.1	Thale cress	cytosol	80.03	79.36
Bra029831.1-P	Field mustard	cytosol	78.76	79.32
CDY08611	Canola	cytosol	78.62	79.18
GSMUA_Achr5P18560_001	Banana	cytosol, peroxisome, plastid	72.57	79.14
Bra006985.1-P	Field mustard	cytosol	78.48	79.04
CDY00922	Canola	cytosol	78.48	79.04
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	80.31	78.76
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	16.03	78.62
CDX76219	Canola	cytosol	57.67	78.54
TraesCS2B01G398100.1	Wheat	cytosol, peroxisome, plastid	56.68	77.5
TraesCS2D01G204400.1	Wheat	peroxisome	72.57	77.25
GSMUA_Achr11P...	Banana	peroxisome	69.62	76.98
TraesCS1D01G039300.1	Wheat	mitochondrion	56.96	76.85
Zm00001d003015_P001	Maize	peroxisome	76.79	76.36
Os04t0518400-01	Rice	extracellular, plasma membrane	76.37	76.05
TraesCS2D01G204700.1	Wheat	peroxisome	75.25	75.67
TraesCS2D01G377600.1	Wheat	plastid	75.39	75.6
Zm00001d017276_P001	Maize	peroxisome	74.82	75.57
HORVU2Hr1G038120.1	Barley	cytosol, peroxisome, plastid	75.11	75.53
TraesCS2D01G218700.1	Wheat	peroxisome	75.11	75.53
OQU81984	Sorghum	peroxisome	75.81	75.49
Bra005221.1-P	Field mustard	peroxisome	39.38	75.47
TraesCS2B01G224000.1	Wheat	peroxisome	74.96	75.39
TraesCS2B01G224300.1	Wheat	cytosol, peroxisome, plastid	74.82	75.35
TraesCS1B01G122800.1	Wheat	cytosol, peroxisome, plastid	74.96	75.28
Os05t0427400-00	Rice	cytosol, peroxisome, plastid	75.81	75.28
HORVU1Hr1G022060.1	Barley	cytosol, peroxisome, plastid	74.82	75.25
TraesCS2B01G398000.2	Wheat	plastid	75.39	75.18
TraesCS1D01G103500.1	Wheat	cytosol, peroxisome, plastid	74.82	75.14
TraesCS1B01G048400.2	Wheat	cytosol, peroxisome, plastid	74.68	75.11
Bra039777.1-P	Field mustard	peroxisome	53.87	75.1
Os02t0626400-01	Rice	mitochondrion, plasma membrane	75.81	75.07
TraesCS2B01G398400.1	Wheat	cytosol, peroxisome, plastid	75.25	75.04
TraesCS2D01G377200.1	Wheat	cytosol, peroxisome, plastid	75.25	75.04
TraesCS2D01G377500.1	Wheat	cytosol, peroxisome, plastid	75.25	75.04
EES05455	Sorghum	cytosol, peroxisome, plastid	75.25	74.93
EES07176	Sorghum	cytosol, peroxisome, plastid	75.25	74.93
EES07177	Sorghum	cytosol, peroxisome, plastid	75.25	74.93
TraesCS6B01G258500.1	Wheat	extracellular, unclear	75.25	74.93
TraesCS2D01G377400.1	Wheat	cytosol, peroxisome, plastid	75.11	74.89
HORVU6Hr1G058840.1	Barley	cytosol, peroxisome, plasma membrane	74.96	74.86
Zm00001d017275_P001	Maize	extracellular	75.67	74.83
HORVU0Hr1G016330.1	Barley	cytosol, peroxisome, plastid	75.25	74.83
TraesCS1D01G039400.1	Wheat	golgi	74.4	74.82
Os02t0627100-01	Rice	plasma membrane	74.96	74.75
TraesCS2B01G398200.1	Wheat	cytosol, peroxisome, plastid	74.96	74.75
TraesCS6B01G258600.1	Wheat	cytosol, peroxisome, plasma membrane	74.82	74.72
TraesCS6D01G212400.1	Wheat	cytosol, peroxisome, plastid	74.96	74.65
HORVU2Hr1G089540.1	Barley	peroxisome	49.23	74.63
EES07175	Sorghum	cytosol, peroxisome, plastid	75.25	74.51
TraesCS1D01G039500.1	Wheat	cytosol, peroxisome, plastid	74.82	74.51
CDX99621	Canola	mitochondrion	57.24	74.41
Zm00001d017279_P001	Maize	cytosol, peroxisome, plastid	74.82	74.41
TraesCS5B01G468300.1	Wheat	cytosol, peroxisome, plastid	73.98	74.4
TraesCS1B01G048500.1	Wheat	cytosol, peroxisome, plastid	74.68	74.37
TraesCS5B01G468400.1	Wheat	peroxisome	57.67	74.28
Zm00001d051163_P002	Maize	peroxisome	74.96	74.23
TraesCS1B01G048100.1	Wheat	cytosol, peroxisome, plastid	74.54	74.23
TraesCS1B01G048300.1	Wheat	cytosol, peroxisome, plastid	74.4	74.19
Zm00001d051166_P001	Maize	extracellular	74.68	74.16
TraesCS6D01G212500.1	Wheat	peroxisome	74.26	74.16
TraesCS1B01G048200.1	Wheat	cytosol, peroxisome, plastid	74.26	73.95
Solyc03g071870.1.1	Tomato	peroxisome	17.72	73.26
CDX74991	Canola	peroxisome	39.1	73.16
CDX91331	Canola	peroxisome	39.1	73.16
Os04t0518100-01	Rice	plasma membrane	72.15	72.56
Os02t0626100-01	Rice	extracellular, plasma membrane	71.45	72.47
AT5G04230.2	Thale cress	peroxisome	70.89	72.21
Os02t0626600-00	Rice	plasma membrane	72.57	72.17
TraesCS6B01G258400.2	Wheat	cytosol, peroxisome, plastid	71.31	72.02
TraesCS6D01G212200.1	Wheat	extracellular, golgi, unclear	71.31	72.02
EES12521	Sorghum	cytosol	71.17	71.98
Zm00001d017274_P001	Maize	plasma membrane	70.89	71.69
EES07174	Sorghum	cytosol, peroxisome, plastid	70.75	71.45
TraesCS3B01G027800.1	Wheat	mitochondrion	54.57	71.32
TraesCS2B01G398300.2	Wheat	peroxisome	36.85	71.2
Zm00001d051161_P003	Maize	plastid	70.32	71.12
Zm00001d029015_P001	Maize	peroxisome	39.8	71.11
CDY13306	Canola	peroxisome	20.96	70.95
TraesCS2B01G020100.1	Wheat	peroxisome	67.93	70.93
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	69.48	70.77
CDY18463	Canola	peroxisome	26.16	70.72
CDY15917	Canola	cytosol, peroxisome, plastid	69.34	70.63
HORVU2Hr1G089440.9	Barley	plasma membrane	75.67	70.14
HORVU2Hr1G038140.1	Barley	mitochondrion, plastid	70.75	69.57
TraesCS3D01G016300.1	Wheat	peroxisome	66.1	68.21
Zm00001d033286_P001	Maize	peroxisome	66.95	68.19
TraesCS3B01G053900.1	Wheat	peroxisome	65.82	67.92
Solyc10g011930.1.1	Tomato	cytosol	12.1	67.72
HORVU3Hr1G005330.2	Barley	cytosol, peroxisome, plasma membrane	65.4	67.39
Os12t0520200-01	Rice	plasma membrane	64.42	67.35
EER93773	Sorghum	peroxisome	66.1	66.29
Solyc10g011920.1.1	Tomato	cytosol	11.81	66.14
Zm00001d027249_P001	Maize	peroxisome	20.68	65.92
TraesCS3D01G016500.1	Wheat	peroxisome	63.85	65.89
Zm00001d020933_P001	Maize	mitochondrion	19.41	65.4
Zm00001d003016_P001	Maize	plastid	71.73	64.64
HORVU6Hr1G058820.2	Barley	mitochondrion	64.42	64.6
Zm00001d053619_P001	Maize	mitochondrion	35.72	60.05
GSMUA_Achr9P15990_001	Banana	peroxisome	57.1	57.75
Zm00001d051164_P001	Maize	peroxisome	12.66	57.32
HORVU2Hr1G062750.1	Barley	mitochondrion	14.21	54.89
CDY61769	Canola	peroxisome	19.41	54.55
Bra028793.1-P	Field mustard	peroxisome	22.5	54.42
Os12t0461300-00	Rice	plastid	17.58	49.41
Os08t0308300-00	Rice	plastid	10.13	38.3

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	MapMan:9.2.1.1.1
InterPro:Aromatic_Lyase	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841
GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	UniProt:K4D451	InterPro:L-Aspartase-like
PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF32	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase
InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	EnsemblPlantsGene:Solyc10g086180.1	EnsemblPlants:Solyc10g086180.1.1	TIGRFAMs:TIGR01226	UniParc:UPI000276935C
SEG:seg	:	:	:	:	:

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:K4D451]

Coordinates

chr10:+:65098335..65101571

Molecular Weight (calculated)

77500.9 Da

IEP (calculated)

6.182

GRAVY (calculated)

-0.150

Length

711 amino acids

Sequence
(BLAST)

001: MAGVINGQQD LDFCIKVDPL NWEMAAESLR GSHLDEVKKM VAEFRKPVVK LGGETLTVAQ VASVAAKVNV ENVKVELCED ARAGVKASSD WVMESMSKGT
101: DSYGVTTGFG ATSHRRTKNG GALQKELIRF LNAGVFGNGT ESCHTLPQSS TRAAMLVRIN TLLQGYSGIR FEILEAITKL INHNVTPCLP LRGTITASGD
201: LVPLSYIAGL LTGRPNSKAV GPNGETLNAE EAFHVAGVNG GFFELQPKEG LALVNGTAVG SGLASIVLFD ANVLAVFSEV LSAIFAEVMN GKPEFTDHLT
301: HKLKHHPGQI EAAAIMEHIL DGSAYVKAAQ KLHEMDPLQK PKQDRYALRT SPQWLGPQIE VIRSATKMIE REINSVNDNP LIDVSRNKAL HGGNFQGTPI
401: GVSMDNARLA LASIGKLMFA QFSELVNDYY NNGLPSNLTA GRNPSLDYGF KGSEIAMASY CSELQFLANP VTNHVQSAEQ HNQDVNSLGL ISARKTAEAV
501: DILKLMSSTY LVALCQAIDL RHLEENLRNA VKNTVCQVAK RTLTMGANGE LHPSRFCEKD LLRIVDREYL FAYADDPCSA NYPLMQKLRQ VLVEHALQNG
601: ENEKNASSSI FQKIVAFEEE LKSVLPREVE SARVALESGN PAIANRINEC RSYPLYKFVR EELGTELLTG ERVRSPGEEC DKVFTAMCNG QIIDSLLECL
701: KEWNGAPLPV C

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.