Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G122800.1 | Wheat | cytosol, peroxisome, plastid | 98.87 | 98.87 |
| TraesCS1A01G094900.1 | Wheat | cytosol, peroxisome, plastid | 69.35 | 98.59 |
| HORVU1Hr1G022060.1 | Barley | cytosol, peroxisome, plastid | 98.45 | 98.59 |
| TraesCS2D01G204700.1 | Wheat | peroxisome | 97.88 | 98.02 |
| TraesCS2D01G204400.1 | Wheat | peroxisome | 92.23 | 97.75 |
| TraesCS2D01G218700.1 | Wheat | peroxisome | 97.32 | 97.45 |
| TraesCS2D01G377400.1 | Wheat | cytosol, peroxisome, plastid | 93.36 | 92.71 |
| TraesCS2D01G377200.1 | Wheat | cytosol, peroxisome, plastid | 93.22 | 92.57 |
| TraesCS2D01G377600.1 | Wheat | plastid | 92.09 | 91.96 |
| TraesCS2D01G377500.1 | Wheat | cytosol, peroxisome, plastid | 92.51 | 91.87 |
| TraesCS1D01G039300.1 | Wheat | mitochondrion | 68.08 | 91.46 |
| TraesCS1D01G039400.1 | Wheat | golgi | 90.82 | 90.95 |
| Os04t0518400-01 | Rice | extracellular, plasma membrane | 91.67 | 90.9 |
| TraesCS1D01G039500.1 | Wheat | cytosol, peroxisome, plastid | 91.53 | 90.76 |
| OQU81984 | Sorghum | peroxisome | 89.69 | 88.94 |
| Zm00001d003015_P001 | Maize | peroxisome | 88.56 | 87.69 |
| TraesCS6D01G212500.1 | Wheat | peroxisome | 86.16 | 85.67 |
| TraesCS6D01G212400.1 | Wheat | cytosol, peroxisome, plastid | 86.3 | 85.57 |
| Solyc03g036480.1.1 | Tomato | peroxisome | 11.72 | 81.37 |
| CDY18464 | Canola | peroxisome | 47.03 | 78.72 |
| PGSC0003DMT400080765 | Potato | peroxisome | 47.74 | 77.7 |
| Solyc03g036470.1.1 | Tomato | mitochondrion | 24.86 | 76.86 |
| Solyc03g042560.1.1 | Tomato | peroxisome | 50.42 | 76.61 |
| CDX67566 | Canola | cytosol | 53.11 | 76.58 |
| PGSC0003DMT400055489 | Potato | mitochondrion | 42.09 | 76.21 |
| CDX78161 | Canola | cytosol | 53.25 | 76.01 |
| CDX73567 | Canola | cytosol | 53.25 | 76.01 |
| KRH34854 | Soybean | cytosol, endoplasmic reticulum, peroxisome | 73.16 | 75.4 |
| Solyc10g086180.1.1 | Tomato | extracellular | 75.14 | 74.82 |
| Bra003126.1-P | Field mustard | cytosol | 74.72 | 74.82 |
| PGSC0003DMT400080548 | Potato | cytosol, peroxisome, plastid | 75.0 | 74.68 |
| AT3G10340.1 | Thale cress | peroxisome | 74.58 | 74.68 |
| CDY66761 | Canola | cytosol, peroxisome, plastid | 54.66 | 74.57 |
| Bra017210.1-P | Field mustard | cytosol, peroxisome, plastid | 75.71 | 74.24 |
| Solyc09g007900.2.1 | Tomato | cytosol, endoplasmic reticulum, peroxisome | 75.56 | 74.2 |
| TraesCS6D01G212200.1 | Wheat | extracellular, golgi, unclear | 73.73 | 74.15 |
| Solyc09g007920.2.1 | Tomato | extracellular, nucleus | 75.42 | 74.06 |
| Solyc09g007910.2.1 | Tomato | extracellular, nucleus | 75.42 | 74.06 |
| KRG91925 | Soybean | cytosol, peroxisome, plastid | 75.0 | 74.06 |
| PGSC0003DMT400055488 | Potato | cytosol, peroxisome, plastid | 75.42 | 73.96 |
| AT3G53260.1 | Thale cress | cytosol | 74.72 | 73.78 |
| CDX76219 | Canola | cytosol | 54.38 | 73.75 |
| CDY08611 | Canola | cytosol | 73.45 | 73.65 |
| Bra029831.1-P | Field mustard | cytosol | 73.45 | 73.65 |
| PGSC0003DMT400049886 | Potato | nucleus, peroxisome, plastid | 71.61 | 73.58 |
| PGSC0003DMT400055531 | Potato | cytosol, peroxisome, plastid | 74.58 | 73.44 |
| Bra006985.1-P | Field mustard | cytosol | 73.16 | 73.37 |
| CDY00922 | Canola | cytosol | 73.02 | 73.23 |
| AT2G37040.1 | Thale cress | cytosol, peroxisome, plastid | 74.44 | 72.69 |
| Solyc03g078280.1.1 | Tomato | peroxisome | 26.41 | 72.48 |
| Solyc09g007890.1.1 | Tomato | plastid | 73.31 | 72.18 |
| Solyc03g071860.2.1 | Tomato | endoplasmic reticulum | 36.86 | 71.51 |
| Bra039777.1-P | Field mustard | peroxisome | 51.27 | 71.18 |
| CDX99621 | Canola | mitochondrion | 54.24 | 70.2 |
| TraesCS3D01G016300.1 | Wheat | peroxisome | 67.94 | 69.81 |
| AT5G04230.2 | Thale cress | peroxisome | 67.8 | 68.77 |
| TraesCS3D01G016500.1 | Wheat | peroxisome | 65.96 | 67.78 |
| Solyc03g078270.1.1 | Tomato | endoplasmic reticulum | 13.84 | 67.59 |
| CDY15917 | Canola | cytosol, peroxisome, plastid | 65.82 | 66.76 |
| Bra030322.1-P | Field mustard | cytosol, peroxisome, plastid | 65.68 | 66.62 |
| Bra005221.1-P | Field mustard | peroxisome | 34.75 | 66.31 |
| CDY13306 | Canola | peroxisome | 19.49 | 65.71 |
| CDX91331 | Canola | peroxisome | 34.46 | 64.21 |
| CDX74991 | Canola | peroxisome | 34.32 | 63.95 |
| CDY18463 | Canola | peroxisome | 23.59 | 63.5 |
| PGSC0003DMT400055529 | Potato | cytosol | 14.83 | 62.87 |
| VIT_11s0016g01640.t01 | Wine grape | peroxisome | 54.52 | 58.05 |
| Solyc03g071870.1.1 | Tomato | peroxisome | 13.56 | 55.81 |
| GSMUA_Achr9P15990_001 | Banana | peroxisome | 55.37 | 55.76 |
| Solyc10g011930.1.1 | Tomato | cytosol | 9.6 | 53.54 |
| Solyc10g011920.1.1 | Tomato | cytosol | 9.6 | 53.54 |
| Bra028793.1-P | Field mustard | peroxisome | 21.19 | 51.02 |
| CDY61769 | Canola | peroxisome | 18.22 | 50.99 |
| VIT_11s0016g01660.t01 | Wine grape | peroxisome | 12.15 | 49.43 |
| VIT_11s0016g01520.t01 | Wine grape | peroxisome | 62.01 | 49.05 |
| VIT_11s0016g01510.t01 | Wine grape | peroxisome | 13.98 | 27.89 |
Protein Annotations
| KEGG:00360+4.3.1.24 | KEGG:00940+4.3.1.24 | Gene3D:1.10.274.20 | Gene3D:1.10.275.10 | Gene3D:1.20.200.10 | MapMan:9.2.1.1.1 |
| InterPro:Aromatic_Lyase | InterPro:Fumarase/histidase_N | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006559 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016841 | InterPro:IPR023144 | InterPro:IPR024083 | InterPro:L-Aspartase-like | PFAM:PF00221 |
| ScanProsite:PS00488 | PANTHER:PTHR10362 | PANTHER:PTHR10362:SF9 | InterPro:Phe/His_NH3-lyase_AS | InterPro:Phe_NH3-lyase | InterPro:Phe_NH3-lyase_shielding_dom_sf |
| SUPFAM:SSF48557 | TIGRFAMs:TIGR01226 | EnsemblPlantsGene:TraesCS1D01G103500 | EnsemblPlants:TraesCS1D01G103500.1 | TIGR:cd00332 | SEG:seg |
Description
No Description!
Coordinates
chr1D:-:93103040..93105166
Molecular Weight (calculated)
76237.4 Da
IEP (calculated)
6.216
GRAVY (calculated)
-0.092
Length
708 amino acids
Sequence
(BLAST)
(BLAST)
001: MAANGNDGLC VAEPRSAADP LNWGKAAEEL SGSHLDAVKR MVEEYRRPVV VMEGASLTIA QVAAVAAAGG ARVELDESAR GRVKESSDWV MASMANGTDS
101: YGVTTGFGAT SHRRTKEGGA LQRELIRFLN AGAFGTGSDG HVLPAATTRA AMLVRVNTLL QGYSGIRFEI LETIATLLNA NVTPCLPLRG TITASGDLVP
201: LSYIAGLVTG RPNAVAVAPD GTKVNAAEAF KIAGIQHGFF ELQPKEGLAM VNGTAVGSGL ASIVLFEANI LAVLAEVLSA VFCEVMNGKP EYTDHLTHKL
301: KHHPGQIEAA AIMEHILEGS SYMMLAKKLG ELDPLMKPKQ DRYALRTSPQ WLGPQIEVIR AATKSIEREI NSVNDNPLID VSRGKAIHGG NFQGTPIGVS
401: MDNTRLAIAA IGKLMFAQFS ELVNDFYNNG LPSNLSGGRN PSLDYGFKGA EIAMASYCSE LQFLGNPVTN HVQSAEQHNQ DVNSLGLISS RKTAEAIDIL
501: KLMSSTFLVA LCQAIDLRHL EENVKNAVKN CVTRVARKTL ITNDMGGLHN ARFCEKDLLQ TIDREAVFAY ADDPCSANYP LMKKMRAVLV EHALANGEAE
601: RNKETSVFAK VATFEQELCA ALPQEVEAAR GAVENGTAAE PNRIADCRSY PLYRFVRKEL GTVYLTGEKT RSPGEEVDKV FIAMNQGKHI NALLECLKEW
701: NDEPLPIC
101: YGVTTGFGAT SHRRTKEGGA LQRELIRFLN AGAFGTGSDG HVLPAATTRA AMLVRVNTLL QGYSGIRFEI LETIATLLNA NVTPCLPLRG TITASGDLVP
201: LSYIAGLVTG RPNAVAVAPD GTKVNAAEAF KIAGIQHGFF ELQPKEGLAM VNGTAVGSGL ASIVLFEANI LAVLAEVLSA VFCEVMNGKP EYTDHLTHKL
301: KHHPGQIEAA AIMEHILEGS SYMMLAKKLG ELDPLMKPKQ DRYALRTSPQ WLGPQIEVIR AATKSIEREI NSVNDNPLID VSRGKAIHGG NFQGTPIGVS
401: MDNTRLAIAA IGKLMFAQFS ELVNDFYNNG LPSNLSGGRN PSLDYGFKGA EIAMASYCSE LQFLGNPVTN HVQSAEQHNQ DVNSLGLISS RKTAEAIDIL
501: KLMSSTFLVA LCQAIDLRHL EENVKNAVKN CVTRVARKTL ITNDMGGLHN ARFCEKDLLQ TIDREAVFAY ADDPCSANYP LMKKMRAVLV EHALANGEAE
601: RNKETSVFAK VATFEQELCA ALPQEVEAAR GAVENGTAAE PNRIADCRSY PLYRFVRKEL GTVYLTGEKT RSPGEEVDKV FIAMNQGKHI NALLECLKEW
701: NDEPLPIC
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
Arabidopsis Description
PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.