Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G212400.1 | Wheat | cytosol, peroxisome, plastid | 99.86 | 99.86 |
| TraesCS6B01G258500.1 | Wheat | extracellular, unclear | 99.44 | 99.44 |
| HORVU0Hr1G016330.1 | Barley | cytosol, peroxisome, plastid | 99.3 | 99.16 |
| Os02t0626400-01 | Rice | mitochondrion, plasma membrane | 93.42 | 92.9 |
| EES07175 | Sorghum | cytosol, peroxisome, plastid | 91.18 | 90.67 |
| Zm00001d017275_P001 | Maize | extracellular | 90.76 | 90.13 |
| TraesCS1A01G094900.1 | Wheat | cytosol, peroxisome, plastid | 62.47 | 89.56 |
| Zm00001d051163_P002 | Maize | peroxisome | 90.06 | 89.55 |
| TraesCS2A01G381100.1 | Wheat | plastid | 87.11 | 87.24 |
| TraesCS2A01G381000.1 | Wheat | plastid | 86.41 | 86.54 |
| TraesCS2A01G196700.1 | Wheat | peroxisome | 85.43 | 86.28 |
| TraesCS2A01G380800.1 | Wheat | cytosol, peroxisome, plastid | 86.13 | 86.26 |
| TraesCS2A01G380900.1 | Wheat | cytosol, peroxisome, plastid | 86.13 | 86.26 |
| TraesCS4A01G401300.1 | Wheat | cytosol, peroxisome, plastid | 85.85 | 85.97 |
| TraesCS2A01G212900.1 | Wheat | cytosol, peroxisome, plastid | 84.87 | 85.71 |
| TraesCS6A01G222700.1 | Wheat | cytosol, peroxisome, plasma membrane | 85.01 | 85.25 |
| TraesCS1A01G037700.1 | Wheat | cytosol, peroxisome, plastid | 84.17 | 85.01 |
| TraesCS1A01G037800.1 | Wheat | cytosol, peroxisome, plastid | 84.87 | 84.87 |
| TraesCS2A01G196400.1 | Wheat | mitochondrion, plastid | 78.43 | 83.83 |
| TraesCS2A01G212600.1 | Wheat | cytosol | 29.55 | 79.62 |
| CDY18464 | Canola | peroxisome | 46.08 | 77.78 |
| CDX67566 | Canola | cytosol | 51.96 | 75.56 |
| CDX78161 | Canola | cytosol | 52.24 | 75.2 |
| CDX73567 | Canola | cytosol | 52.24 | 75.2 |
| TraesCS6A01G222900.1 | Wheat | extracellular, golgi, unclear | 73.39 | 74.43 |
| CDY66761 | Canola | cytosol, peroxisome, plastid | 54.06 | 74.37 |
| Bra003126.1-P | Field mustard | cytosol | 73.11 | 73.83 |
| AT3G10340.1 | Thale cress | peroxisome | 72.97 | 73.69 |
| Bra017210.1-P | Field mustard | cytosol, peroxisome, plastid | 74.51 | 73.68 |
| Bra029831.1-P | Field mustard | cytosol | 72.83 | 73.65 |
| CDY00922 | Canola | cytosol | 72.83 | 73.65 |
| CDX76219 | Canola | cytosol | 53.78 | 73.56 |
| CDY08611 | Canola | cytosol | 72.69 | 73.51 |
| AT2G37040.1 | Thale cress | cytosol, peroxisome, plastid | 74.09 | 72.97 |
| AT3G53260.1 | Thale cress | cytosol | 73.11 | 72.8 |
| Bra006985.1-P | Field mustard | cytosol | 71.43 | 72.24 |
| Bra039777.1-P | Field mustard | peroxisome | 50.84 | 71.18 |
| CDX99621 | Canola | mitochondrion | 53.36 | 69.65 |
| AT5G04230.2 | Thale cress | peroxisome | 67.09 | 68.62 |
| TraesCS3A01G029200.1 | Wheat | peroxisome | 65.97 | 68.36 |
| Bra030322.1-P | Field mustard | cytosol, peroxisome, plastid | 64.85 | 66.33 |
| CDY15917 | Canola | cytosol, peroxisome, plastid | 64.71 | 66.19 |
| Bra005221.1-P | Field mustard | peroxisome | 32.91 | 63.34 |
| CDY18463 | Canola | peroxisome | 22.97 | 62.36 |
| CDY13306 | Canola | peroxisome | 18.07 | 61.43 |
| CDX74991 | Canola | peroxisome | 32.63 | 61.32 |
| CDX91331 | Canola | peroxisome | 32.63 | 61.32 |
| VIT_11s0016g01640.t01 | Wine grape | peroxisome | 54.62 | 58.65 |
| GSMUA_Achr9P15990_001 | Banana | peroxisome | 55.18 | 56.05 |
| CDY61769 | Canola | peroxisome | 18.07 | 50.99 |
| Bra028793.1-P | Field mustard | peroxisome | 20.73 | 50.34 |
| VIT_11s0016g01520.t01 | Wine grape | peroxisome | 62.6 | 49.94 |
| VIT_11s0016g01660.t01 | Wine grape | peroxisome | 11.62 | 47.7 |
| TraesCS5A01G558600.1 | Wheat | mitochondrion | 17.51 | 29.83 |
| VIT_11s0016g01510.t01 | Wine grape | peroxisome | 14.71 | 29.58 |
Protein Annotations
| KEGG:00360+4.3.1.24 | KEGG:00940+4.3.1.24 | Gene3D:1.10.274.20 | Gene3D:1.10.275.10 | Gene3D:1.20.200.10 | MapMan:9.2.1.1.1 |
| InterPro:Aromatic_Lyase | InterPro:Fumarase/histidase_N | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006559 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016841 | InterPro:IPR023144 | InterPro:IPR024083 | InterPro:L-Aspartase-like | PFAM:PF00221 |
| ScanProsite:PS00488 | PANTHER:PTHR10362 | PANTHER:PTHR10362:SF22 | InterPro:Phe/His_NH3-lyase_AS | InterPro:Phe_NH3-lyase | InterPro:Phe_NH3-lyase_shielding_dom_sf |
| SUPFAM:SSF48557 | TIGRFAMs:TIGR01226 | EnsemblPlantsGene:TraesCS6A01G222800 | EnsemblPlants:TraesCS6A01G222800.1 | TIGR:cd00332 | SEG:seg |
Description
No Description!
Coordinates
chr6A:+:416654584..416658623
Molecular Weight (calculated)
77200.0 Da
IEP (calculated)
6.112
GRAVY (calculated)
-0.083
Length
714 amino acids
Sequence
(BLAST)
(BLAST)
001: MECETGLVGS LNGEGLCMSA PRADPLNWVK TAEELTGSHL EEVKKMVAQF REPLVTIEGA SLGIAQVAAV AAGAGVARVA LDESARGRVK ESSDWVMTSM
101: MNGTDSYGVT TGFGATSHRR TKEGGALQRE LIRFLNAGAF GTGTDGHVLP AEATRAAMLV RINTLLQGYS GIRFEILEAI TKLLNANVTP CLPLRGTITA
201: SGDLVPLSYI AGLITGRQNS VAVAPDGSKV TAAEAFKIAG IEHGFFELQP KEGLAMVNGT AVGSGLASTV LFEANVLSVL AEVLSAVFCE VMNGKPEFTD
301: HLTHKLKHHP GQIEAAAIME HILEGSSYMK QAKKLGELDP LMKPKQDRYA LRTSPQWLGP QIEVIRFATK SIEREINSVN DNPLIDVSRG KAIHGGNFQG
401: TPIGVSMDNT RLAIAAIGKL MFAQFSELVN DFYNNGLPSN LSGGRNPSLD YGFKGAEIAM ASYCSELQFL GNPVTNHVQS AEQHNQDVNS LGLISSRKTA
501: EAIDILKIMS STFLVALCQA IDLRHIEENM KTAVRNCVMQ VAKKTLSMNN MGGLHIARFC EKDLLTAIDR EAVFAYADDP CSPNYPLMQK LRAVLVEHAL
601: ANGDGERALE TSIFAKVAEF EQNIRAVLPK EVEAARASVE NGTPLAPNRI KDCRSYPLYQ FVREVCGTEY LTGEKTRSPG EELNKVLVAM NERKHIDPLL
701: ECLKEWNGEP LPLC
101: MNGTDSYGVT TGFGATSHRR TKEGGALQRE LIRFLNAGAF GTGTDGHVLP AEATRAAMLV RINTLLQGYS GIRFEILEAI TKLLNANVTP CLPLRGTITA
201: SGDLVPLSYI AGLITGRQNS VAVAPDGSKV TAAEAFKIAG IEHGFFELQP KEGLAMVNGT AVGSGLASTV LFEANVLSVL AEVLSAVFCE VMNGKPEFTD
301: HLTHKLKHHP GQIEAAAIME HILEGSSYMK QAKKLGELDP LMKPKQDRYA LRTSPQWLGP QIEVIRFATK SIEREINSVN DNPLIDVSRG KAIHGGNFQG
401: TPIGVSMDNT RLAIAAIGKL MFAQFSELVN DFYNNGLPSN LSGGRNPSLD YGFKGAEIAM ASYCSELQFL GNPVTNHVQS AEQHNQDVNS LGLISSRKTA
501: EAIDILKIMS STFLVALCQA IDLRHIEENM KTAVRNCVMQ VAKKTLSMNN MGGLHIARFC EKDLLTAIDR EAVFAYADDP CSPNYPLMQK LRAVLVEHAL
601: ANGDGERALE TSIFAKVAEF EQNIRAVLPK EVEAARASVE NGTPLAPNRI KDCRSYPLYQ FVREVCGTEY LTGEKTRSPG EELNKVLVAM NERKHIDPLL
701: ECLKEWNGEP LPLC
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
Arabidopsis Description
PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.