CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
vacuole 1
peroxisome 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88591
EER93773
EES05455
EES06499
EES07174
EES07175
EES07176
EES07177
EES12521
OQU81984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	EER93773	AT2G37040.1	21798944
AT2G37040.1	EES05455	AT2G37040.1	21798944
AT2G37040.1	EES07174	AT2G37040.1	21798944
AT2G37040.1	EES07175	AT2G37040.1	21798944
AT2G37040.1	EES07176	AT2G37040.1	21798944
AT2G37040.1	EES07177	AT2G37040.1	21798944
AT2G37040.1	EES12521	AT2G37040.1	21798944
AT2G37040.1	OQU81984	AT2G37040.1	21798944
AT2G37040.1	EER93773	AT3G10340.1	21798944
AT2G37040.1	EES05455	AT3G10340.1	21798944
AT2G37040.1	EES07174	AT3G10340.1	21798944
AT2G37040.1	EES07175	AT3G10340.1	21798944
AT2G37040.1	EES07176	AT3G10340.1	21798944
AT2G37040.1	EES07177	AT3G10340.1	21798944
AT2G37040.1	EES12521	AT3G10340.1	21798944
AT2G37040.1	OQU81984	AT3G10340.1	21798944
AT3G10340.1	EER88591	AT1G15670.1	21798944
AT3G10340.1	EES06499	AT1G15670.1	21798944
AT3G53260.1	EER93773	AT3G10340.1	21798944
AT3G53260.1	EES05455	AT3G10340.1	21798944
AT3G53260.1	EES07174	AT3G10340.1	21798944
AT3G53260.1	EES07175	AT3G10340.1	21798944
AT3G53260.1	EES07176	AT3G10340.1	21798944
AT3G53260.1	EES07177	AT3G10340.1	21798944
AT3G53260.1	EES12521	AT3G10340.1	21798944
AT3G53260.1	OQU81984	AT3G10340.1	21798944
AT3G53260.1	EER93773	AT3G53260.1	21798944
AT3G53260.1	EES05455	AT3G53260.1	21798944
AT3G53260.1	EES07174	AT3G53260.1	21798944
AT3G53260.1	EES07175	AT3G53260.1	21798944
AT3G53260.1	EES07176	AT3G53260.1	21798944
AT3G53260.1	EES07177	AT3G53260.1	21798944
AT3G53260.1	EES12521	AT3G53260.1	21798944
AT3G53260.1	OQU81984	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017275_P001	Maize	extracellular	96.1	95.97
Zm00001d051163_P002	Maize	peroxisome	95.26	95.26
Os02t0626400-01	Rice	mitochondrion, plasma membrane	94.01	94.01
TraesCS6D01G212400.1	Wheat	cytosol, peroxisome, plastid	90.81	91.32
TraesCS6A01G222800.1	Wheat	cytosol, peroxisome, plastid	90.67	91.18
TraesCS6B01G258500.1	Wheat	extracellular, unclear	90.53	91.04
HORVU0Hr1G016330.1	Barley	cytosol, peroxisome, plastid	90.53	90.91
EES07177	Sorghum	cytosol, peroxisome, plastid	88.58	89.08
EES07176	Sorghum	cytosol, peroxisome, plastid	88.58	89.08
EES05455	Sorghum	cytosol, peroxisome, plastid	88.44	88.94
OQU81984	Sorghum	peroxisome	86.49	86.97
Solyc03g036480.1.1	Tomato	peroxisome	11.98	84.31
Solyc03g036470.1.1	Tomato	mitochondrion	24.93	78.17
PGSC0003DMT400080765	Potato	peroxisome	47.08	77.7
CDY18464	Canola	peroxisome	45.4	77.07
Solyc03g042560.1.1	Tomato	peroxisome	49.86	76.82
PGSC0003DMT400055489	Potato	mitochondrion	41.5	76.21
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	72.14	75.4
EER93773	Sorghum	peroxisome	74.37	75.32
Solyc10g086180.1.1	Tomato	extracellular	74.51	75.25
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	74.37	75.11
CDX67566	Canola	cytosol	51.25	74.95
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	75.07	74.76
Solyc09g007910.2.1	Tomato	extracellular, nucleus	75.07	74.76
Solyc09g007920.2.1	Tomato	extracellular, nucleus	74.93	74.62
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	74.93	74.52
CDX73567	Canola	cytosol	51.39	74.4
CDX78161	Canola	cytosol	51.39	74.4
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	74.37	74.27
EES07174	Sorghum	cytosol, peroxisome, plastid	72.7	74.15
KRG91925	Soybean	cytosol, peroxisome, plastid	73.96	74.06
AT3G10340.1	Thale cress	peroxisome	72.7	73.83
CDY00922	Canola	cytosol	72.56	73.8
CDY66761	Canola	cytosol, peroxisome, plastid	53.2	73.6
Bra003126.1-P	Field mustard	cytosol	72.42	73.55
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	73.96	73.55
CDY08611	Canola	cytosol	72.28	73.51
Bra029831.1-P	Field mustard	cytosol	72.28	73.51
Solyc09g007890.1.1	Tomato	plastid	73.4	73.3
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	70.33	73.29
Solyc03g078280.1.1	Tomato	peroxisome	26.18	72.87
CDX76219	Canola	cytosol	52.92	72.8
EES12521	Sorghum	cytosol	71.17	72.69
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	73.12	72.41
AT3G53260.1	Thale cress	cytosol	72.01	72.11
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	36.49	71.78
Bra006985.1-P	Field mustard	cytosol	70.19	71.39
Bra039777.1-P	Field mustard	peroxisome	50.0	70.39
CDX99621	Canola	mitochondrion	53.06	69.65
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	13.79	68.28
AT5G04230.2	Thale cress	peroxisome	66.16	68.05
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	64.76	66.62
CDY15917	Canola	cytosol, peroxisome, plastid	64.62	66.48
CDY18463	Canola	peroxisome	23.82	65.02
Bra005221.1-P	Field mustard	peroxisome	33.29	64.42
CDY13306	Canola	peroxisome	18.52	63.33
CDX91331	Canola	peroxisome	33.01	62.37
CDX74991	Canola	peroxisome	33.01	62.37
PGSC0003DMT400055529	Potato	cytosol	14.48	62.28
Solyc03g071870.1.1	Tomato	peroxisome	14.07	58.72
VIT_11s0016g01640.t01	Wine grape	peroxisome	54.04	58.35
GSMUA_Achr9P15990_001	Banana	peroxisome	56.27	57.47
Solyc10g011930.1.1	Tomato	cytosol	9.75	55.12
Solyc10g011920.1.1	Tomato	cytosol	9.61	54.33
Bra028793.1-P	Field mustard	peroxisome	21.45	52.38
CDY61769	Canola	peroxisome	18.38	52.17
VIT_11s0016g01520.t01	Wine grape	peroxisome	61.84	49.61
VIT_11s0016g01660.t01	Wine grape	peroxisome	11.14	45.98
VIT_11s0016g01510.t01	Wine grape	peroxisome	14.48	29.3

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:8066166
MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase	UniProt:C5XXT9	EnsemblPlants:EES07175	ProteinID:EES07175	ProteinID:EES07175.1
InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748
GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	PFAM:PF00221	ScanProsite:PS00488
PANTHER:PTHR10362	PANTHER:PTHR10362:SF22	MetaCyc:PWY-1121	MetaCyc:PWY-5883	MetaCyc:PWY-6444	MetaCyc:PWY-6457
InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	EnsemblPlantsGene:SORBI_3004G220400	SUPFAM:SSF48557	unigene:Sbi.1755
TIGRFAMs:TIGR01226	UniParc:UPI0001A85F49	RefSeq:XP_002454199.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:57064914..57069724

Molecular Weight (calculated)

77604.2 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.119

Length

718 amino acids

Sequence
(BLAST)

001: MECETGLVRS LNGDGLCMSA QAAPRGADPL NWGKAAEDLS GSHLEEVKRM VAEFRDPVVK IQGASLSIAQ VAAVAAGAGE ARVELDESAR ERVKASSDWV
101: MSSMMNGTDS YGVTTGFGAT SHRRTKEGGA LQRELIRFLN AGAFGTGADG HVLPAEATRA AMLVRINTLL QGYSGIRFEI LEAIAKLLNA NVTPCLPLRG
201: TITASGDLVP LSYIAGLITG RQNSVAVAPD GRKVDAAEAF KIAGIEHGFF ELQPKEGLAM VNGTAVGSGL ASTVLFEANV LAIMAEVISA VFCEVMTGKP
301: EFTDHLTHKL KHHPGQIEAA AIMEHILEGS SYMKLAKKLG ELDPLMKPKQ DRYALRTSPQ WLGPQIEVIR FATKSIEREI NSVNDNPLID VSRGKALHGG
401: NFQGTPIGVS MDNTRLALAA IGKLMFAQFS ELVNDYYNNG LPSNLSGGRN PSLDYGFKGA EIAMASYCSE LQFLGNPVTN HVQSAEQHNQ DVNSLGLISS
501: RKTAEAIDIL KLMTSTFLIA LCQAIDLRHI EENVKAAVKN CVTQVAKKSL SLNARGGLHN ARFCEKDLQT AIDREAVFAY ADDPCSPNYP LMQKLRAVLI
601: EHALANGDAE RVVETSIFAK VAEFEQQVRA ALPKEVEAAR AAVESGNPLV PNRIKECRSY PLYRFVREEV GTQYLTGEKT RSPGEELNKV LVAINQRKHV
701: DPLLECLKEW NGEPLPLC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.