CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88591
EER93773
EES05455
EES06499
EES07174
EES07175
EES07176
EES07177
EES12521
OQU81984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	EER93773	AT2G37040.1	21798944
AT2G37040.1	EES05455	AT2G37040.1	21798944
AT2G37040.1	EES07174	AT2G37040.1	21798944
AT2G37040.1	EES07175	AT2G37040.1	21798944
AT2G37040.1	EES07176	AT2G37040.1	21798944
AT2G37040.1	EES07177	AT2G37040.1	21798944
AT2G37040.1	EES12521	AT2G37040.1	21798944
AT2G37040.1	OQU81984	AT2G37040.1	21798944
AT2G37040.1	EER93773	AT3G10340.1	21798944
AT2G37040.1	EES05455	AT3G10340.1	21798944
AT2G37040.1	EES07174	AT3G10340.1	21798944
AT2G37040.1	EES07175	AT3G10340.1	21798944
AT2G37040.1	EES07176	AT3G10340.1	21798944
AT2G37040.1	EES07177	AT3G10340.1	21798944
AT2G37040.1	EES12521	AT3G10340.1	21798944
AT2G37040.1	OQU81984	AT3G10340.1	21798944
AT3G10340.1	EER88591	AT1G15670.1	21798944
AT3G10340.1	EES06499	AT1G15670.1	21798944
AT3G53260.1	EER93773	AT3G10340.1	21798944
AT3G53260.1	EES05455	AT3G10340.1	21798944
AT3G53260.1	EES07174	AT3G10340.1	21798944
AT3G53260.1	EES07175	AT3G10340.1	21798944
AT3G53260.1	EES07176	AT3G10340.1	21798944
AT3G53260.1	EES07177	AT3G10340.1	21798944
AT3G53260.1	EES12521	AT3G10340.1	21798944
AT3G53260.1	OQU81984	AT3G10340.1	21798944
AT3G53260.1	EER93773	AT3G53260.1	21798944
AT3G53260.1	EES05455	AT3G53260.1	21798944
AT3G53260.1	EES07174	AT3G53260.1	21798944
AT3G53260.1	EES07175	AT3G53260.1	21798944
AT3G53260.1	EES07176	AT3G53260.1	21798944
AT3G53260.1	EES07177	AT3G53260.1	21798944
AT3G53260.1	EES12521	AT3G53260.1	21798944
AT3G53260.1	OQU81984	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0518100-01	Rice	plasma membrane	90.18	89.67
EES07174	Sorghum	cytosol, peroxisome, plastid	87.62	87.5
Zm00001d003016_P001	Maize	plastid	97.58	86.95
Solyc03g036480.1.1	Tomato	peroxisome	10.81	74.51
OQU81984	Sorghum	peroxisome	75.68	74.51
EES07177	Sorghum	cytosol, peroxisome, plastid	75.39	74.23
EES07176	Sorghum	cytosol, peroxisome, plastid	75.39	74.23
EES05455	Sorghum	cytosol, peroxisome, plastid	75.39	74.23
CDY18464	Canola	peroxisome	44.52	74.0
Solyc03g036470.1.1	Tomato	mitochondrion	23.9	73.36
PGSC0003DMT400080765	Potato	peroxisome	44.95	72.64
Solyc03g042560.1.1	Tomato	peroxisome	47.23	71.24
EES07175	Sorghum	cytosol, peroxisome, plastid	72.69	71.17
Solyc10g086180.1.1	Tomato	extracellular	71.98	71.17
PGSC0003DMT400055489	Potato	mitochondrion	39.54	71.1
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	71.83	71.03
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	68.99	70.6
AT3G10340.1	Thale cress	peroxisome	70.7	70.3
CDX67566	Canola	cytosol	48.79	69.86
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	68.28	69.67
CDX78161	Canola	cytosol	49.08	69.56
CDX73567	Canola	cytosol	48.93	69.35
KRG91925	Soybean	cytosol, peroxisome, plastid	70.7	69.32
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	71.12	69.25
AT3G53260.1	Thale cress	cytosol	70.41	69.04
Bra003126.1-P	Field mustard	cytosol	69.42	69.02
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	70.55	68.79
CDY66761	Canola	cytosol, peroxisome, plastid	50.78	68.79
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	70.55	68.7
Solyc09g007920.2.1	Tomato	extracellular, nucleus	70.41	68.65
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	70.13	68.57
CDY00922	Canola	cytosol	68.85	68.56
Bra029831.1-P	Field mustard	cytosol	68.71	68.41
CDY08611	Canola	cytosol	68.71	68.41
Solyc09g007910.2.1	Tomato	extracellular, nucleus	69.99	68.24
Solyc03g078280.1.1	Tomato	peroxisome	25.04	68.22
CDX76219	Canola	cytosol	50.64	68.2
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	70.27	68.14
Bra006985.1-P	Field mustard	cytosol	68.28	67.99
CDX99621	Canola	mitochondrion	52.35	67.28
Solyc09g007890.1.1	Tomato	plastid	68.28	66.76
EER93773	Sorghum	peroxisome	66.71	66.15
Bra039777.1-P	Field mustard	peroxisome	47.65	65.69
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	33.71	64.93
AT5G04230.2	Thale cress	peroxisome	64.3	64.76
CDY15917	Canola	cytosol, peroxisome, plastid	64.01	64.47
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	13.23	64.14
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	63.44	63.9
Bra005221.1-P	Field mustard	peroxisome	32.57	61.73
CDX74991	Canola	peroxisome	32.29	59.74
CDX91331	Canola	peroxisome	32.29	59.74
CDY13306	Canola	peroxisome	17.64	59.05
CDY18463	Canola	peroxisome	21.76	58.17
VIT_11s0016g01640.t01	Wine grape	peroxisome	52.92	55.94
GSMUA_Achr9P15990_001	Banana	peroxisome	55.48	55.48
PGSC0003DMT400055529	Potato	cytosol	13.09	55.09
Solyc10g011930.1.1	Tomato	cytosol	9.67	53.54
Solyc10g011920.1.1	Tomato	cytosol	9.53	52.76
Solyc03g071870.1.1	Tomato	peroxisome	12.66	51.74
VIT_11s0016g01660.t01	Wine grape	peroxisome	12.66	51.15
VIT_11s0016g01520.t01	Wine grape	peroxisome	60.88	47.82
CDY61769	Canola	peroxisome	17.07	47.43
Bra028793.1-P	Field mustard	peroxisome	19.49	46.6
VIT_11s0016g01510.t01	Wine grape	peroxisome	12.66	25.07

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:8054282
MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase	UniProt:C5YCD6	EnsemblPlants:EES12521	ProteinID:EES12521	ProteinID:EES12521.1
InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748
GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	PFAM:PF00221	ScanProsite:PS00488
PANTHER:PTHR10362	PANTHER:PTHR10362:SF33	MetaCyc:PWY-1121	MetaCyc:PWY-5883	MetaCyc:PWY-6444	MetaCyc:PWY-6457
InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	EnsemblPlantsGene:SORBI_3006G148800	SUPFAM:SSF48557	unigene:Sbi.18127
TIGRFAMs:TIGR01226	UniParc:UPI0001A87376	RefSeq:XP_002448193.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:51039816..51042905

Molecular Weight (calculated)

75702.8 Da

IEP (calculated)

6.695

GRAVY (calculated)

-0.083

Length

703 amino acids

Sequence
(BLAST)

001: MASNTAILES DPLSWGKAAA ELTGSHLDEV KRMVAQFRDP VVKIEGSTLR VGQVAAVAAA KDASGVAVEL DEEARPRVKA SSEWILDCIA HGGDIYGVTT
101: GFGGTSHRRT KDGPALQVEL LRHLNAGIFG NGSDGHTLPS EVSRAAMLVR INTLLQGYSG IRFEILEAIT KLLNTGVSPC LPLRGTITAS GDLVPLSYIA
201: GLITGRPNAQ AVTVDGRKVD AAEAFKVAGI QGGFFKLNPK EGLAIVNGTS VGSALAAMVC FDANVLAVLS SVLSAVFCEV MNGKPEYTDH LTHKLKHHPG
301: SIESAAIMEH ILDGSSFMKH AKEVNAMDPL LKPKQDRYAL RTSPQWLGPQ IEVIRAATKS IEREVNSVND NPVIDVHRGK ALHGGNFQGT PIGVSMDNAR
401: LAIANIGKLM FAQFSELVNE FYNNGLTSNL AGSRNPSLDY GFKGTEIAMA SYCSELQYLA NPITNHVQSA EQHNQDVNSL GLVSARKTAE AVDILKLMSS
501: TYMVALCQAV DLRHLEENLK SAVKNCVMAA ARKVLTTSLD GDLHSARFSE KALLTAIDRE AVYGYYDDPC SANSPLMKKI RAVLVDHALA SGEAEKDASA
601: SVFSKINRFE EALREALPRE MEAARVAFET GTAPIGNRIK DSRSYPLYRF IRQDLGAVYL TGEKLKSPGE ECNKVFLALS EGKLIDPMLE CLKEWDGKPL
701: PIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.