Factsheet for PGSC0003DMT400055531

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006583
PGSC0003DMT400006584
PGSC0003DMT400042650
PGSC0003DMT400042651
PGSC0003DMT400042652
PGSC0003DMT400049886
PGSC0003DMT400055488
PGSC0003DMT400055489
PGSC0003DMT400055529
PGSC0003DMT400055531
PGSC0003DMT400080548
PGSC0003DMT400080765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	PGSC0003DMT400049886	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400055488	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400055489	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400055529	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400055531	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400080548	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400080765	AT2G37040.1	21798944
AT2G37040.1	PGSC0003DMT400049886	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400055488	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400055489	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400055529	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400055531	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400080548	AT3G10340.1	21798944
AT2G37040.1	PGSC0003DMT400080765	AT3G10340.1	21798944
AT3G10340.1	PGSC0003DMT400006583	AT1G15670.1	21798944
AT3G10340.1	PGSC0003DMT400006584	AT1G15670.1	21798944
AT3G10340.1	PGSC0003DMT400042650	AT1G15670.1	21798944
AT3G10340.1	PGSC0003DMT400042651	AT1G15670.1	21798944
AT3G10340.1	PGSC0003DMT400042652	AT1G15670.1	21798944
AT3G53260.1	PGSC0003DMT400049886	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400055488	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400055489	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400055529	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400055531	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400080548	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400080765	AT3G10340.1	21798944
AT3G53260.1	PGSC0003DMT400049886	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400055488	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400055489	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400055529	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400055531	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400080548	AT3G53260.1	21798944
AT3G53260.1	PGSC0003DMT400080765	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	96.8	96.4
PGSC0003DMT400080765	Potato	peroxisome	58.0	95.86
PGSC0003DMT400055489	Potato	mitochondrion	50.76	93.35
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	86.37	90.13
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	88.04	89.03
PGSC0003DMT400055529	Potato	cytosol	20.45	88.02
CDY18464	Canola	peroxisome	49.51	84.16
GSMUA_Achr5P03950_001	Banana	cytosol, peroxisome, plastid	74.55	82.33
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	78.44	82.1
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	80.39	81.75
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	81.92	81.47
GSMUA_Achr1P09070_001	Banana	peroxisome	73.71	81.04
GSMUA_Achr5P18560_001	Banana	cytosol, peroxisome, plastid	73.3	80.83
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	81.08	80.75
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	73.44	80.61
GSMUA_Achr8P18960_001	Banana	cytosol, peroxisome, plastid	67.18	80.37
KRG91925	Soybean	cytosol, peroxisome, plastid	80.11	80.33
GSMUA_Achr2P00240_001	Banana	peroxisome	72.74	80.09
CDX78161	Canola	cytosol	55.22	80.04
CDX73567	Canola	cytosol	55.08	79.84
CDY66761	Canola	cytosol, peroxisome, plastid	57.58	79.77
AT3G10340.1	Thale cress	peroxisome	78.3	79.63
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	80.25	79.59
Bra003126.1-P	Field mustard	cytosol	78.03	79.35
CDX67566	Canola	cytosol	54.1	79.23
AT3G53260.1	Thale cress	cytosol	79.0	79.22
Bra029831.1-P	Field mustard	cytosol	77.33	78.75
CDY08611	Canola	cytosol	77.33	78.75
CDX76219	Canola	cytosol	57.16	78.74
CDY00922	Canola	cytosol	76.77	78.19
Bra006985.1-P	Field mustard	cytosol	76.36	77.76
GSMUA_Achr11P...	Banana	peroxisome	69.4	77.61
TraesCS2B01G398100.1	Wheat	cytosol, peroxisome, plastid	55.91	77.31
TraesCS2D01G204400.1	Wheat	peroxisome	70.79	76.2
TraesCS1D01G039300.1	Wheat	mitochondrion	55.77	76.09
Bra039777.1-P	Field mustard	peroxisome	53.55	75.49
Zm00001d017276_P001	Maize	peroxisome	73.85	75.43
EES05455	Sorghum	cytosol, peroxisome, plastid	74.69	75.21
EES07176	Sorghum	cytosol, peroxisome, plastid	74.69	75.21
EES07177	Sorghum	cytosol, peroxisome, plastid	74.69	75.21
Zm00001d003015_P001	Maize	peroxisome	74.69	75.1
HORVU2Hr1G038120.1	Barley	cytosol, peroxisome, plastid	73.71	74.96
Bra005221.1-P	Field mustard	peroxisome	38.66	74.93
Os02t0626400-01	Rice	mitochondrion, plasma membrane	74.83	74.93
Os04t0518400-01	Rice	extracellular, plasma membrane	74.41	74.93
TraesCS2D01G377600.1	Wheat	plastid	73.71	74.75
TraesCS1B01G122800.1	Wheat	cytosol, peroxisome, plastid	73.57	74.72
Zm00001d017279_P001	Maize	cytosol, peroxisome, plastid	74.27	74.69
HORVU1Hr1G022060.1	Barley	cytosol, peroxisome, plastid	73.44	74.68
TraesCS2D01G204700.1	Wheat	peroxisome	73.44	74.68
TraesCS2B01G398000.2	Wheat	plastid	73.99	74.61
TraesCS2D01G377200.1	Wheat	cytosol, peroxisome, plastid	73.99	74.61
TraesCS1D01G103500.1	Wheat	cytosol, peroxisome, plastid	73.44	74.58
TraesCS2B01G224000.1	Wheat	peroxisome	73.3	74.54
TraesCS2D01G218700.1	Wheat	peroxisome	73.3	74.54
TraesCS2B01G224300.1	Wheat	cytosol, peroxisome, plastid	73.16	74.5
Os02t0627100-01	Rice	plasma membrane	73.85	74.47
HORVU6Hr1G058840.1	Barley	cytosol, peroxisome, plasma membrane	73.71	74.44
HORVU2Hr1G089540.1	Barley	peroxisome	48.54	74.41
Zm00001d017275_P001	Maize	extracellular	74.41	74.41
TraesCS5B01G468300.1	Wheat	cytosol, peroxisome, plastid	73.16	74.4
EES07175	Sorghum	cytosol, peroxisome, plastid	74.27	74.37
OQU81984	Sorghum	peroxisome	73.85	74.37
TraesCS5B01G468400.1	Wheat	peroxisome	57.02	74.28
TraesCS1B01G048400.2	Wheat	cytosol, peroxisome, plastid	73.02	74.26
TraesCS6B01G258500.1	Wheat	extracellular, unclear	73.71	74.23
TraesCS2B01G398200.1	Wheat	cytosol, peroxisome, plastid	73.57	74.19
TraesCS2D01G377500.1	Wheat	cytosol, peroxisome, plastid	73.57	74.19
Zm00001d051166_P001	Maize	extracellular	73.85	74.16
HORVU0Hr1G016330.1	Barley	cytosol, peroxisome, plastid	73.71	74.13
Zm00001d051163_P002	Maize	peroxisome	73.99	74.09
TraesCS1B01G048500.1	Wheat	cytosol, peroxisome, plastid	73.57	74.09
TraesCS1B01G048300.1	Wheat	cytosol, peroxisome, plastid	73.44	74.05
TraesCS2B01G398400.1	Wheat	cytosol, peroxisome, plastid	73.44	74.05
TraesCS2D01G377400.1	Wheat	cytosol, peroxisome, plastid	73.44	74.05
TraesCS6B01G258600.1	Wheat	cytosol, peroxisome, plasma membrane	73.3	74.02
TraesCS1D01G039400.1	Wheat	golgi	72.74	73.97
TraesCS1B01G048100.1	Wheat	cytosol, peroxisome, plastid	73.44	73.95
TraesCS1D01G039500.1	Wheat	cytosol, peroxisome, plastid	73.44	73.95
TraesCS6D01G212400.1	Wheat	cytosol, peroxisome, plastid	73.44	73.95
Os05t0427400-00	Rice	cytosol, peroxisome, plastid	73.57	73.88
CDX99621	Canola	mitochondrion	56.19	73.86
TraesCS6D01G212500.1	Wheat	peroxisome	72.88	73.6
TraesCS1B01G048200.1	Wheat	cytosol, peroxisome, plastid	73.02	73.53
CDX74991	Canola	peroxisome	38.8	73.42
CDX91331	Canola	peroxisome	38.8	73.42
AT5G04230.2	Thale cress	peroxisome	70.65	72.78
Os02t0626600-00	Rice	plasma membrane	72.04	72.45
CDY13306	Canola	peroxisome	20.86	71.43
Zm00001d029015_P001	Maize	peroxisome	39.5	71.36
PGSC0003DMT400014003	Potato	peroxisome	66.06	71.21
CDY18463	Canola	peroxisome	26.01	71.1
TraesCS2B01G398300.2	Wheat	peroxisome	36.3	70.92
Os04t0518100-01	Rice	plasma membrane	69.68	70.86
Zm00001d017274_P001	Maize	plasma membrane	69.26	70.84
Os02t0626100-01	Rice	extracellular, plasma membrane	68.85	70.61
EES07174	Sorghum	cytosol, peroxisome, plastid	68.85	70.31
Zm00001d051161_P003	Maize	plastid	68.71	70.27
EES12521	Sorghum	cytosol	68.57	70.13
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	68.01	70.06
TraesCS6D01G212200.1	Wheat	extracellular, golgi, unclear	68.57	70.03
CDY15917	Canola	cytosol, peroxisome, plastid	67.87	69.91
TraesCS6B01G258400.2	Wheat	cytosol, peroxisome, plastid	68.43	69.89
TraesCS2B01G020100.1	Wheat	peroxisome	66.06	69.75
TraesCS3B01G027800.1	Wheat	mitochondrion	52.43	69.3
HORVU2Hr1G089440.9	Barley	plasma membrane	73.85	69.23
HORVU2Hr1G038140.1	Barley	mitochondrion, plastid	69.12	68.74
Zm00001d033286_P001	Maize	peroxisome	66.62	68.62
Os12t0520200-01	Rice	plasma membrane	63.84	67.5
TraesCS3D01G016300.1	Wheat	peroxisome	63.84	66.62
Zm00001d020933_P001	Maize	mitochondrion	19.47	66.35
HORVU3Hr1G005330.2	Barley	cytosol, peroxisome, plasma membrane	63.56	66.23
Zm00001d027249_P001	Maize	peroxisome	20.45	65.92
TraesCS3B01G053900.1	Wheat	peroxisome	63.14	65.89
EER93773	Sorghum	peroxisome	64.95	65.87
TraesCS3D01G016500.1	Wheat	peroxisome	61.89	64.59
HORVU6Hr1G058820.2	Barley	mitochondrion	62.17	63.05
Zm00001d003016_P001	Maize	plastid	68.98	62.86
Zm00001d053619_P001	Maize	mitochondrion	35.33	60.05
Zm00001d051164_P001	Maize	peroxisome	12.52	57.32
GSMUA_Achr9P15990_001	Banana	peroxisome	55.91	57.18
CDY61769	Canola	peroxisome	18.5	52.57
Bra028793.1-P	Field mustard	peroxisome	21.42	52.38
HORVU2Hr1G062750.1	Barley	mitochondrion	13.35	52.17
Os12t0461300-00	Rice	plastid	16.83	47.83
Os08t0308300-00	Rice	plastid	10.57	40.43

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:107057661
MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase	ProteinID:CAA44817	ProteinID:CAA44817.1	ProteinID:CAA44818	ProteinID:CAA44818.1
InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748
GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	UniProt:M1BY41	PFAM:PF00221
EnsemblPlantsGene:PGSC0003DMG402021564	PGSC:PGSC0003DMG402021564	EnsemblPlants:PGSC0003DMT400055531	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF32
InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	TIGRFAMs:TIGR01226	UniParc:UPI000295DFFF
EMBL:X63103	EMBL:X63104	RefSeq:XP_006354337.1	:	:	:

Description

Phenylalanine ammonia-lyase [Source:PGSC_GENE;Acc:PGSC0003DMG402021564]

Coordinates

chr9:+:5530471..5533348

Molecular Weight (calculated)

78233.8 Da

IEP (calculated)

6.562

GRAVY (calculated)

-0.177

Length

719 amino acids

Sequence
(BLAST)

001: MAQNGHINGE VVAMELCKKS INVHDPLNWE MAADSLRGSH LDEVKKMVDE FRKPIVKLGG ETLTVAQVAS IANADNKSNG VKVELSESSR AGVKASSDWV
101: MDSMSKGTDS YGVTTGFGAT SHRRTKNGGA LQKELIRFLN AGVFGNGTES SHTLPHSATR AAMLVRINTL LQGYSGIRFE ILEAITKLIN SNITPCLPLR
201: GTVTASGDLV PLSYIAGLLT GRPNSKAVGP NGEKLDADEA FRVAGVSGGF FELQPKEGLA LVNGTAVGSG MASIVLYDSN ILAVMSEVLS AIFAEVMNGK
301: PEFTDYLTHK LKHHPGQIEA AAIMEHILDG SSYVKAAQKL HEMDPLQKPK QDRYALRTSP QWLGPQIEVI RAATKMIERE INSVNDNPLI DVSRNKALHG
401: GNFQGTPIGV SMDNTRLALA SIGKLMFAQF SELVNDYYNN GLPSNLTAGR NPSLDYGFKG AEIAMASYCS ELQFLANPVT NHVQSAEQHN QDVNSLGLIS
501: ARKTAEAVDI LKLMSSTYLV ALCQAIDLRH LEENLKNAVK NTVSQVAKKT LTIGANGELH PARFCEKELL QVVEREYLFT YADDPCSSTY PLMQKLRQVL
601: VDHAMKNGVS ETNVNSSIFQ KIVAFEEELK AVLPKEVESA RAMLESGNPS IPNRITECRS YPLYRLVRQE LGTEVLTGEK IRSPGEEIDK VFTAFCNGQI
701: IDPLLECLKS WNGAPLPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.