Factsheet for GSMUA_Achr1P09070_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
vacuole 1
peroxisome 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09070_001
GSMUA_Achr2P00240_001
GSMUA_Achr5P03950_001
GSMUA_Achr5P18560_001
GSMUA_Achr8P18960_001
GSMUA_Achr9P15990_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	GSMUA_Achr11P...	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr11P...	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr1P09070_001	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr2P00240_001	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr5P03950_001	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr5P18560_001	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr8P18960_001	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr9P15990_001	AT2G37040.1	21798944
AT2G37040.1	GSMUA_Achr11P...	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr11P...	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr1P09070_001	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr2P00240_001	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr5P03950_001	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr5P18560_001	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr8P18960_001	AT3G10340.1	21798944
AT2G37040.1	GSMUA_Achr9P15990_001	AT3G10340.1	21798944
AT3G10340.1	GSMUA_AchrUn_...	AT1G15670.1	21798944
AT3G53260.1	GSMUA_Achr11P...	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr11P...	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr1P09070_001	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr2P00240_001	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr5P03950_001	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr5P18560_001	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr8P18960_001	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr9P15990_001	AT3G10340.1	21798944
AT3G53260.1	GSMUA_Achr11P...	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr11P...	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr1P09070_001	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr2P00240_001	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr5P03950_001	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr5P18560_001	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr8P18960_001	AT3G53260.1	21798944
AT3G53260.1	GSMUA_Achr9P15990_001	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	86.39	86.26
GSMUA_Achr2P00240_001	Banana	peroxisome	86.09	86.22
GSMUA_Achr8P18960_001	Banana	cytosol, peroxisome, plastid	78.9	85.86
GSMUA_Achr5P18560_001	Banana	cytosol, peroxisome, plastid	85.47	85.74
GSMUA_Achr5P03950_001	Banana	cytosol, peroxisome, plastid	85.32	85.71
Solyc03g036480.1.1	Tomato	peroxisome	12.84	82.35
GSMUA_Achr11P...	Banana	peroxisome	80.73	82.12
Solyc03g036470.1.1	Tomato	mitochondrion	28.29	80.79
CDX67566	Canola	cytosol	59.33	79.02
CDX78161	Canola	cytosol	59.48	78.43
CDX73567	Canola	cytosol	59.33	78.23
CDY66761	Canola	cytosol, peroxisome, plastid	61.62	77.65
CDX76219	Canola	cytosol	61.47	77.01
CDY00922	Canola	cytosol	82.26	76.2
CDY08611	Canola	cytosol	82.11	76.06
Bra029831.1-P	Field mustard	cytosol	81.96	75.92
PGSC0003DMT400080765	Potato	peroxisome	50.46	75.86
AT3G10340.1	Thale cress	peroxisome	81.8	75.67
Solyc03g042560.1.1	Tomato	peroxisome	53.82	75.54
CDY18464	Canola	peroxisome	48.62	75.18
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	81.19	74.68
Solyc09g007920.2.1	Tomato	extracellular, nucleus	82.26	74.62
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	82.26	74.62
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	78.29	74.53
Solyc10g086180.1.1	Tomato	extracellular	80.89	74.4
Solyc09g007910.2.1	Tomato	extracellular, nucleus	81.96	74.34
Bra003126.1-P	Field mustard	cytosol	80.28	74.26
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	81.65	73.96
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	81.8	73.79
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	81.04	73.71
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	81.35	73.68
AT3G53260.1	Thale cress	cytosol	80.58	73.5
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	77.37	73.44
Solyc09g007890.1.1	Tomato	plastid	80.73	73.44
Bra039777.1-P	Field mustard	peroxisome	57.19	73.33
PGSC0003DMT400055489	Potato	mitochondrion	43.73	73.15
KRG91925	Soybean	cytosol, peroxisome, plastid	80.12	73.08
Bra006985.1-P	Field mustard	cytosol	78.44	72.66
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	16.05	72.41
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	38.99	69.86
AT5G04230.2	Thale cress	peroxisome	74.16	69.48
CDX99621	Canola	mitochondrion	57.95	69.29
CDY13306	Canola	peroxisome	22.17	69.05
CDY15917	Canola	cytosol, peroxisome, plastid	72.63	68.05
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	72.32	67.77
CDY18463	Canola	peroxisome	26.91	66.92
Solyc03g078280.1.1	Tomato	peroxisome	25.84	65.5
Bra005221.1-P	Field mustard	peroxisome	36.85	64.96
CDX74991	Canola	peroxisome	36.7	63.16
CDX91331	Canola	peroxisome	36.7	63.16
Solyc03g071870.1.1	Tomato	peroxisome	16.51	62.79
Solyc10g011930.1.1	Tomato	cytosol	11.47	59.06
Solyc10g011920.1.1	Tomato	cytosol	11.31	58.27
GSMUA_Achr9P15990_001	Banana	peroxisome	59.63	55.48
CDY61769	Canola	peroxisome	20.95	54.15
PGSC0003DMT400055529	Potato	cytosol	13.15	51.5
Bra028793.1-P	Field mustard	peroxisome	22.02	48.98

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.275.10	Gene3D:1.20.200.10	MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase
InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748
GO:GO:0045548	EnsemblPlantsGene:GSMUA_Achr1G09070_001	EnsemblPlants:GSMUA_Achr1P09070_001	EnsemblPlants:GSMUA_Achr1T09070_001	InterPro:IPR024083	InterPro:L-Aspartase-like
UniProt:M0RYB6	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF32	InterPro:Phe/His_NH3-lyase_AS
InterPro:Phe_NH3-lyase	SUPFAM:SSF48557	TIGRFAMs:TIGR01226	UniParc:UPI0002958056	SEG:seg	:

Description

Phenylalanine ammonia-lyase [Source:GMGC_GENE;Acc:GSMUA_Achr1G09070_001]

Coordinates

chr1:+:6953461..6955865

Molecular Weight (calculated)

70929.3 Da

IEP (calculated)

6.404

GRAVY (calculated)

-0.106

Length

654 amino acids

Sequence
(BLAST)

001: MEFAPKAQVV ENGEAFCLKA DPLNWIKAAE SLTGSHLDEV KRMVEEFRKP QVRLEGATLT ISQVAAVAAA RSPVRVELSE EARDGVRASS EWVMESMNKG
101: TDSYGVTTGF GATSHRRTKQ GGALQKELIR FLNAGIFGSG PESGNTLPSS AAKAAMLVRV NTLLQGYSGI RFEILEAIAS LLNNGITPCL PLRGTITASG
201: DLVPLSYIAG ILTGRPNAKA VGPDGKVIGA AEAFRLAGIA DGFFELQPKE GLALVNGTAV GSGLASMVLF EANVLAVLSE VLSAVFCEVM QGKPEFTDHL
301: THKLKHHPGQ IEAAAIMEHI LEGSSYMKMA QKLHEQDPLQ KPKQDRYALR TSPQWLGPQI EVIRASTKSI EREINSVNDN PLIDVSRSKA LHGGNFQGTP
401: IGVSMDNTRL AVAAIGKLMF AQFSELVNDF YNNGLPSNLS GGRNPSLDYG FKGAEIAMAA YCSELQFLAN PVTNHVQSAE QHNQDVNSLG LISARKTAEA
501: VDILKLMSTT YLVALCQAVD LRHLEENLKS AVKSTVSQVA KRVLTMGANG ELHPARFCEK ELIKVVDREH VFTYVDDPCS ATYPLMQKLR QECRSYPLYR
601: LVREELKTGF LTGEKVTSPG EEFDKVFDAI CQGKVIDPLL ECLKEWDGAP IPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.