Factsheet for Solyc03g042560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
vacuole 4
extracellular 3
endoplasmic reticulum 3
plasma membrane 3
golgi 3
peroxisome 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g036470.1.1
Solyc03g036480.1.1
Solyc03g042560.1.1
Solyc03g071860.2.1
Solyc03g071870.1.1
Solyc03g078270.1.1
Solyc03g078280.1.1
Solyc03g120320.1.1
Solyc03g120330.1.1
Solyc06g066770.1.1
Solyc09g007890.1.1
Solyc09g007900.2.1
Solyc09g007910.2.1
Solyc09g007920.2.1
Solyc10g011920.1.1
Solyc10g011930.1.1
Solyc10g086180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	Solyc03g036470.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g036480.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g042560.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g071860.2.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g071870.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g078270.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g078280.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc09g007890.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc09g007900.2.1	AT2G37040.1	21798944
AT2G37040.1	Solyc09g007910.2.1	AT2G37040.1	21798944
AT2G37040.1	Solyc09g007920.2.1	AT2G37040.1	21798944
AT2G37040.1	Solyc10g011920.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc10g011930.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc10g086180.1.1	AT2G37040.1	21798944
AT2G37040.1	Solyc03g036470.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g036480.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g042560.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g071860.2.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g071870.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g078270.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc03g078280.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc09g007890.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc09g007900.2.1	AT3G10340.1	21798944
AT2G37040.1	Solyc09g007910.2.1	AT3G10340.1	21798944
AT2G37040.1	Solyc09g007920.2.1	AT3G10340.1	21798944
AT2G37040.1	Solyc10g011920.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc10g011930.1.1	AT3G10340.1	21798944
AT2G37040.1	Solyc10g086180.1.1	AT3G10340.1	21798944
AT3G10340.1	Solyc03g120320.1.1	AT1G15670.1	21798944
AT3G10340.1	Solyc03g120330.1.1	AT1G15670.1	21798944
AT3G10340.1	Solyc06g066770.1.1	AT1G15670.1	21798944
AT3G53260.1	Solyc03g036470.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g036480.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g042560.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g071860.2.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g071870.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g078270.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g078280.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc09g007890.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc09g007900.2.1	AT3G10340.1	21798944
AT3G53260.1	Solyc09g007910.2.1	AT3G10340.1	21798944
AT3G53260.1	Solyc09g007920.2.1	AT3G10340.1	21798944
AT3G53260.1	Solyc10g011920.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc10g011930.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc10g086180.1.1	AT3G10340.1	21798944
AT3G53260.1	Solyc03g036470.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g036480.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g042560.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g071860.2.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g071870.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g078270.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc03g078280.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc09g007890.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc09g007900.2.1	AT3G53260.1	21798944
AT3G53260.1	Solyc09g007910.2.1	AT3G53260.1	21798944
AT3G53260.1	Solyc09g007920.2.1	AT3G53260.1	21798944
AT3G53260.1	Solyc10g011920.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc10g011930.1.1	AT3G53260.1	21798944
AT3G53260.1	Solyc10g086180.1.1	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g078280.1.1	Tomato	peroxisome	48.71	87.98
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	66.95	85.48
Solyc03g036480.1.1	Tomato	peroxisome	18.67	85.29
CDY18464	Canola	peroxisome	74.03	81.56
TraesCS2B01G398300.2	Wheat	peroxisome	50.21	63.59
TraesCS1D01G039300.1	Wheat	mitochondrion	70.6	62.43
CDX99621	Canola	mitochondrion	72.1	61.43
Solyc09g007920.2.1	Tomato	extracellular, nucleus	94.21	60.89
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	93.99	60.75
Solyc09g007910.2.1	Tomato	extracellular, nucleus	93.13	60.19
Solyc09g007890.1.1	Tomato	plastid	90.56	58.69
Solyc10g086180.1.1	Tomato	extracellular	87.98	57.67
TraesCS3B01G027800.1	Wheat	mitochondrion	65.88	56.43
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	82.83	56.19
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	84.33	54.36
KRG91925	Soybean	cytosol, peroxisome, plastid	82.83	53.84
Bra006985.1-P	Field mustard	cytosol	81.55	53.82
GSMUA_Achr1P09070_001	Banana	peroxisome	75.54	53.82
TraesCS2D01G204400.1	Wheat	peroxisome	77.04	53.74
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	81.76	53.74
AT3G10340.1	Thale cress	peroxisome	81.33	53.61
Bra029831.1-P	Field mustard	cytosol	80.9	53.4
CDY08611	Canola	cytosol	80.9	53.4
AT3G53260.1	Thale cress	cytosol	81.76	53.14
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	16.52	53.1
Bra003126.1-P	Field mustard	cytosol	80.26	52.9
GSMUA_Achr5P03950_001	Banana	cytosol, peroxisome, plastid	73.82	52.84
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	81.76	52.77
GSMUA_Achr5P18560_001	Banana	cytosol, peroxisome, plastid	73.82	52.76
CDY00922	Canola	cytosol	79.83	52.69
GSMUA_Achr2P00240_001	Banana	peroxisome	73.18	52.22
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	73.39	52.21
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	81.12	52.14
GSMUA_Achr8P18960_001	Banana	cytosol, peroxisome, plastid	66.31	51.41
TraesCS5B01G468300.1	Wheat	cytosol, peroxisome, plastid	77.68	51.2
TraesCS1B01G048400.2	Wheat	cytosol, peroxisome, plastid	77.25	50.92
TraesCS2D01G218700.1	Wheat	peroxisome	77.25	50.92
TraesCS1B01G048300.1	Wheat	cytosol, peroxisome, plastid	77.9	50.91
HORVU2Hr1G038120.1	Barley	cytosol, peroxisome, plastid	77.04	50.78
TraesCS1B01G122800.1	Wheat	cytosol, peroxisome, plastid	77.04	50.71
GSMUA_Achr11P...	Banana	peroxisome	69.96	50.7
TraesCS1D01G039400.1	Wheat	golgi	76.82	50.64
TraesCS2B01G224000.1	Wheat	peroxisome	76.82	50.64
TraesCS2D01G204700.1	Wheat	peroxisome	76.82	50.64
TraesCS2D01G377600.1	Wheat	plastid	77.04	50.63
TraesCS2B01G398000.2	Wheat	plastid	77.47	50.63
TraesCS2D01G377200.1	Wheat	cytosol, peroxisome, plastid	77.47	50.63
TraesCS1B01G048500.1	Wheat	cytosol, peroxisome, plastid	77.47	50.56
HORVU1Hr1G022060.1	Barley	cytosol, peroxisome, plastid	76.61	50.49
Os02t0626600-00	Rice	plasma membrane	77.47	50.49
Zm00001d003015_P001	Maize	peroxisome	77.47	50.49
Zm00001d017276_P001	Maize	peroxisome	76.18	50.43
TraesCS2B01G224300.1	Wheat	cytosol, peroxisome, plastid	76.39	50.42
TraesCS1D01G103500.1	Wheat	cytosol, peroxisome, plastid	76.61	50.42
Os04t0518400-01	Rice	extracellular, plasma membrane	77.25	50.42
TraesCS1B01G048100.1	Wheat	cytosol, peroxisome, plastid	77.25	50.42
TraesCS1B01G048200.1	Wheat	cytosol, peroxisome, plastid	77.25	50.42
TraesCS1D01G039500.1	Wheat	cytosol, peroxisome, plastid	77.25	50.42
TraesCS2D01G377400.1	Wheat	cytosol, peroxisome, plastid	77.04	50.35
OQU81984	Sorghum	peroxisome	77.04	50.28
TraesCS6B01G258500.1	Wheat	extracellular, unclear	77.04	50.28
TraesCS2B01G398200.1	Wheat	cytosol, peroxisome, plastid	76.82	50.21
TraesCS2B01G398400.1	Wheat	cytosol, peroxisome, plastid	76.82	50.21
TraesCS2D01G377500.1	Wheat	cytosol, peroxisome, plastid	76.82	50.21
HORVU0Hr1G016330.1	Barley	cytosol, peroxisome, plastid	77.04	50.21
TraesCS2B01G398100.1	Wheat	cytosol, peroxisome, plastid	56.01	50.19
TraesCS6D01G212400.1	Wheat	cytosol, peroxisome, plastid	76.82	50.14
Zm00001d017275_P001	Maize	extracellular	77.25	50.07
Os02t0626400-01	Rice	mitochondrion, plasma membrane	77.04	50.0
Os02t0627100-01	Rice	plasma membrane	76.39	49.93
EES07175	Sorghum	cytosol, peroxisome, plastid	76.82	49.86
Zm00001d051163_P002	Maize	peroxisome	76.61	49.72
Os05t0427400-00	Rice	cytosol, peroxisome, plastid	76.39	49.72
HORVU6Hr1G058840.1	Barley	cytosol, peroxisome, plasma membrane	75.97	49.72
Zm00001d017279_P001	Maize	cytosol, peroxisome, plastid	76.18	49.65
TraesCS6B01G258600.1	Wheat	cytosol, peroxisome, plasma membrane	75.75	49.58
HORVU2Hr1G038140.1	Barley	mitochondrion, plastid	76.82	49.52
EES05455	Sorghum	cytosol, peroxisome, plastid	75.75	49.44
EES07176	Sorghum	cytosol, peroxisome, plastid	75.75	49.44
EES07177	Sorghum	cytosol, peroxisome, plastid	75.75	49.44
TraesCS6D01G212500.1	Wheat	peroxisome	75.54	49.44
AT5G04230.2	Thale cress	peroxisome	73.82	49.28
Zm00001d051166_P001	Maize	extracellular	75.54	49.16
Os04t0518100-01	Rice	plasma membrane	74.25	48.94
TraesCS2B01G020100.1	Wheat	peroxisome	70.39	48.16
Os02t0626100-01	Rice	extracellular, plasma membrane	72.32	48.07
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	71.89	47.99
CDY15917	Canola	cytosol, peroxisome, plastid	71.89	47.99
TraesCS6B01G258400.2	Wheat	cytosol, peroxisome, plastid	71.89	47.59
TraesCS6D01G212200.1	Wheat	extracellular, golgi, unclear	71.89	47.59
Zm00001d017274_P001	Maize	plasma membrane	71.67	47.51
EES07174	Sorghum	cytosol, peroxisome, plastid	71.46	47.3
HORVU6Hr1G058820.2	Barley	mitochondrion	71.89	47.25
EES12521	Sorghum	cytosol	71.24	47.23
Zm00001d051161_P003	Maize	plastid	71.03	47.08
HORVU2Hr1G089440.9	Barley	plasma membrane	77.47	47.07
Zm00001d033286_P001	Maize	peroxisome	68.67	45.85
CDX73567	Canola	cytosol	48.71	45.77
CDX78161	Canola	cytosol	48.71	45.77
Os12t0520200-01	Rice	plasma membrane	65.88	45.15
CDX67566	Canola	cytosol	47.42	45.01
HORVU3Hr1G005330.2	Barley	cytosol, peroxisome, plasma membrane	66.52	44.93
TraesCS3D01G016300.1	Wheat	peroxisome	66.31	44.85
TraesCS3B01G053900.1	Wheat	peroxisome	65.88	44.56
Solyc03g036470.1.1	Tomato	mitochondrion	21.89	44.54
EER93773	Sorghum	peroxisome	67.6	44.43
TraesCS5B01G468400.1	Wheat	peroxisome	52.15	44.02
Bra005221.1-P	Field mustard	peroxisome	34.76	43.67
Bra039777.1-P	Field mustard	peroxisome	47.64	43.53
CDY66761	Canola	cytosol, peroxisome, plastid	48.28	43.35
TraesCS3D01G016500.1	Wheat	peroxisome	63.73	43.11
CDX76219	Canola	cytosol	48.07	42.91
Zm00001d003016_P001	Maize	plastid	71.89	42.46
CDX74991	Canola	peroxisome	34.33	42.11
CDX91331	Canola	peroxisome	34.33	42.11
GSMUA_Achr9P15990_001	Banana	peroxisome	61.16	40.54
Os12t0461300-00	Rice	plastid	21.46	39.53
HORVU2Hr1G089540.1	Barley	peroxisome	39.06	38.81
Zm00001d029015_P001	Maize	peroxisome	29.83	34.92
Os08t0308300-00	Rice	plastid	12.88	31.91
CDY13306	Canola	peroxisome	11.8	26.19
Zm00001d053619_P001	Maize	mitochondrion	22.53	24.82
Bra028793.1-P	Field mustard	peroxisome	14.38	22.79
Zm00001d027249_P001	Maize	peroxisome	10.73	22.42
Zm00001d020933_P001	Maize	mitochondrion	9.01	19.91
CDY61769	Canola	peroxisome	9.66	17.79
HORVU2Hr1G062750.1	Barley	mitochondrion	2.58	6.52
CDY18463	Canola	peroxisome	1.5	2.66
Zm00001d051164_P001	Maize	peroxisome	0.64	1.91
Solyc03g071870.1.1	Tomato	peroxisome	0.21	0.58
Solyc10g011920.1.1	Tomato	cytosol	0.0	0.0
Solyc10g011930.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.20.200.10	MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829
GO:GO:0016841	InterPro:IPR023144	UniProt:K4BFX7	InterPro:L-Aspartase-like	PFAM:PF00221	PANTHER:PTHR10362
PANTHER:PTHR10362:SF32	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	EnsemblPlantsGene:Solyc03g042560.1	EnsemblPlants:Solyc03g042560.1.1
TIGRFAMs:TIGR01226	UniParc:UPI0002767F80	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:6964865..6966333

Molecular Weight (calculated)

51517.3 Da

IEP (calculated)

6.361

GRAVY (calculated)

-0.148

Length

466 amino acids

Sequence
(BLAST)

001: MPKEGLALVN GTAVGSAMAS IVLFESNILA VMSEVLSAIF AEVMNGKPEF TDYLTHKLKH HPGQIEAAAI MEHILDGSSY VKVAQKLHEM DPLKKPKKDR
101: YALRTSPQWL GPQIEVIRAA TKMIEREINS VNDNPLIGVS RNKALHGGNF QGTPIGVSMD NTRLALASIG KLMFAQFLEL VNDYYNNGLP SNLTVGSNPS
201: LDYGFKGAEI AMASYCSELQ FLANPVTNHV QSAEQHNQDV NSLGLISARK TAEAVDILKI MSSTYLVALC QAIDLRHLEE NLKSVVKNTV SQVAKRTLTM
301: GANGELHPAR FSEKELLRVV DREYLFAYVD DPCSSNYPLM QKLRQVLVDQ AMKNGESEKN VNSSIFQKIG AFEDELIAVL PKEVESVRAV VESGNPLIRN
401: RITECRSYPL YRLVREELGT ELLTGEKVRS PGEEIDKVFT AMCNGQIIDP LLECLKRWNG APLPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.