Factsheet for Solyc03g120330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g036470.1.1
Solyc03g036480.1.1
Solyc03g042560.1.1
Solyc03g071860.2.1
Solyc03g071870.1.1
Solyc03g078270.1.1
Solyc03g078280.1.1
Solyc09g007890.1.1
Solyc09g007900.2.1
Solyc09g007910.2.1
Solyc09g007920.2.1
Solyc10g011920.1.1
Solyc10g011930.1.1
Solyc10g086180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	Solyc03g036470.1.1	AT2G37040.1	21798944
AT1G15670.1	Solyc03g036480.1.1	AT2G37040.1	21798944
AT1G15670.1	Solyc03g042560.1.1	AT2G37040.1	21798944
AT1G15670.1	Solyc03g071860.2.1	AT2G37040.1	21798944
AT1G15670.1	Solyc03g071870.1.1	AT2G37040.1	21798944
AT1G15670.1	Solyc03g078270.1.1	AT2G37040.1	21798944
AT1G15670.1	Solyc03g078280.1.1	AT2G37040.1	21798944
AT1G15670.1	Solyc09g007890.1.1	AT2G37040.1	21798944
AT1G15670.1	Solyc09g007900.2.1	AT2G37040.1	21798944
AT1G15670.1	Solyc09g007910.2.1	AT2G37040.1	21798944
AT1G15670.1	Solyc09g007920.2.1	AT2G37040.1	21798944
AT1G15670.1	Solyc10g011920.1.1	AT2G37040.1	21798944
AT1G15670.1	Solyc10g011930.1.1	AT2G37040.1	21798944
AT1G15670.1	Solyc10g086180.1.1	AT2G37040.1	21798944
AT1G15670.1	Solyc03g036470.1.1	AT3G53260.1	21798944
AT1G15670.1	Solyc03g036480.1.1	AT3G53260.1	21798944
AT1G15670.1	Solyc03g042560.1.1	AT3G53260.1	21798944
AT1G15670.1	Solyc03g071860.2.1	AT3G53260.1	21798944
AT1G15670.1	Solyc03g071870.1.1	AT3G53260.1	21798944
AT1G15670.1	Solyc03g078270.1.1	AT3G53260.1	21798944
AT1G15670.1	Solyc03g078280.1.1	AT3G53260.1	21798944
AT1G15670.1	Solyc09g007890.1.1	AT3G53260.1	21798944
AT1G15670.1	Solyc09g007900.2.1	AT3G53260.1	21798944
AT1G15670.1	Solyc09g007910.2.1	AT3G53260.1	21798944
AT1G15670.1	Solyc09g007920.2.1	AT3G53260.1	21798944
AT1G15670.1	Solyc10g011920.1.1	AT3G53260.1	21798944
AT1G15670.1	Solyc10g011930.1.1	AT3G53260.1	21798944
AT1G15670.1	Solyc10g086180.1.1	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006583	Potato	cytosol	90.3	90.56
Solyc06g066770.1.1	Tomato	cytosol	66.48	65.4
Solyc03g120320.1.1	Tomato	cytosol	52.35	53.24
GSMUA_AchrUn_...	Banana	mitochondrion	10.25	50.0
KRH23494	Soybean	cytosol	48.75	49.16
KRH47516	Soybean	cytosol	47.92	48.87
AT1G80440.1	Thale cress	cytosol	46.26	47.18
KRH44388	Soybean	cytosol	45.98	47.03
CDY53309	Canola	cytosol	46.26	46.65
CDY58028	Canola	cytosol	46.26	46.65
Bra026116.1-P	Field mustard	cytosol	46.26	46.65
CDY36579	Canola	cytosol	46.26	46.65
Bra026753.1-P	Field mustard	cytosol	46.26	46.65
CDY69686	Canola	cytosol	45.15	45.66
CDX87309	Canola	cytosol	44.88	45.13
Bra035183.1-P	Field mustard	cytosol	44.88	45.13
CDY39979	Canola	cytosol	44.88	45.13
AT1G15670.1	Thale cress	cytosol	44.6	44.85
KRH09825	Soybean	cytosol	45.98	43.34
Os02t0208700-00	Rice	cytosol	32.96	38.76
Os06t0594400-02	Rice	cytosol	40.72	38.58
TraesCS7B01G257400.1	Wheat	cytosol	40.72	38.18
TraesCS7D01G352400.1	Wheat	cytosol	40.17	37.66
EER88591	Sorghum	cytosol	39.89	37.4
Zm00001d036925_P001	Maize	cytosol	39.61	37.34
TraesCS6A01G178900.1	Wheat	cytosol	38.23	37.1
EES06499	Sorghum	cytosol	37.67	36.46
TraesCS6B01G206300.1	Wheat	cytosol	37.4	36.29
TraesCS6D01G165600.1	Wheat	cytosol	35.18	35.77
Solyc10g080610.1.1	Tomato	cytosol	31.3	32.85

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.2	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538
GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR001810	InterPro:IPR015915
UniProt:K4BMI2	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24413
PANTHER:PTHR24413:SF93	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc03g120330.1	EnsemblPlants:Solyc03g120330.1.1
UniParc:UPI0002766B95	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:68755571..68756656

Molecular Weight (calculated)

40703.7 Da

IEP (calculated)

5.995

GRAVY (calculated)

-0.246

Length

361 amino acids

Sequence
(BLAST)

001: MDLLPGLPND IALECLIRLP LHQFSKAASV CKNWKKEIKH PLFRQRRKES GLTRPVIVLS QAMVTTIRDP YGITSLSSTQ YYRLTLYDPE RGFWYDLPPI
101: PELIDGLPMF CRVVGVGSDV MVIGGCDPVN WRVMDSVFIY NFVSGSWRRG ADMPGGQRLF FGCASDSERF VVVAGGHNDE KNALRSALLY DVAEDEWVTL
201: PEMAMERDEC KCAFYRGEFH VIGGYPTPAQ GQFQRSAEVF NSATSREWRL EEDFLGAATC PQTCVEGGDG RLYMCRDGDV VVKLDATWKH VARLPRGVSN
301: GAYVTAWQGK LLAMGNSILG EIQNIYELVD VNSESKEKTW RKLNTPNEYR GHVQSLCYLD I

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.