CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91925
KRH34854

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	KRG91925	AT2G37040.1	21798944
AT1G15670.1	KRH34854	AT2G37040.1	21798944
AT1G15670.1	KRG91925	AT3G53260.1	21798944
AT1G15670.1	KRH34854	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23494	Soybean	cytosol	75.72	81.01
VIT_09s0002g08870.t01	Wine grape	cytosol	19.06	64.04
KRH47516	Soybean	cytosol	55.87	60.45
KRH44388	Soybean	cytosol	53.0	57.51
GSMUA_AchrUn_...	Banana	mitochondrion	10.97	56.76
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	42.82	53.77
VIT_09s0002g05080.t01	Wine grape	cytosol	47.52	51.27
PGSC0003DMT400006584	Potato	cytosol	45.95	49.58
Solyc03g120320.1.1	Tomato	cytosol	45.69	49.3
VIT_09s0002g08860.t01	Wine grape	cytosol	43.34	47.7
VIT_09s0002g04930.t01	Wine grape	cytosol	18.8	46.75
VIT_09s0002g08880.t01	Wine grape	cytosol	37.6	46.75
Solyc03g120330.1.1	Tomato	cytosol	43.34	45.98
Solyc06g066770.1.1	Tomato	cytosol	43.6	45.5
PGSC0003DMT400042652	Potato	cytosol	42.56	45.03
CDY36579	Canola	cytosol	41.78	44.69
Bra026116.1-P	Field mustard	cytosol	41.78	44.69
PGSC0003DMT400042651	Potato	cytosol	42.04	44.48
CDY58028	Canola	cytosol	41.51	44.41
AT1G80440.1	Thale cress	cytosol	40.99	44.35
PGSC0003DMT400006583	Potato	cytosol	41.51	44.17
Bra035183.1-P	Field mustard	cytosol	40.99	43.73
CDY69686	Canola	cytosol	40.73	43.7
Bra026753.1-P	Field mustard	cytosol	40.73	43.58
CDY53309	Canola	cytosol	40.73	43.58
AT1G15670.1	Thale cress	cytosol	40.73	43.45
VIT_09s0002g05210.t01	Wine grape	cytosol	15.14	43.28
CDX87309	Canola	cytosol	40.47	43.18
CDY39979	Canola	cytosol	40.21	42.9
Os02t0208700-00	Rice	cytosol	33.94	42.35
PGSC0003DMT400042650	Potato	cytosol	41.78	42.33
Os06t0594400-02	Rice	cytosol	40.47	40.68
TraesCS6B01G206300.1	Wheat	cytosol	38.64	39.78
TraesCS7D01G352400.1	Wheat	cytosol	39.95	39.74
EES06499	Sorghum	cytosol	38.64	39.68
TraesCS7B01G257400.1	Wheat	cytosol	39.69	39.48
EER88591	Sorghum	cytosol	39.69	39.48
Zm00001d036925_P001	Maize	cytosol	39.43	39.43
TraesCS6A01G178900.1	Wheat	cytosol	38.12	39.25
TraesCS6D01G165600.1	Wheat	cytosol	35.51	38.31
KRH58914	Soybean	extracellular, plasma membrane	31.85	31.69

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.2	EMBL:ACUP02009111	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_15G013300
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161
UniProt:I1MCL9	InterPro:IPR001810	InterPro:IPR015915	EnsemblPlants:KRH09825	ProteinID:KRH09825	ProteinID:KRH09825.1
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24413	PANTHER:PTHR24413:SF93
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00023D1D31	:	:

Description

hypothetical protein

Coordinates

chr15:+:1076291..1077923

Molecular Weight (calculated)

42428.0 Da

IEP (calculated)

6.951

GRAVY (calculated)

-0.104

Length

383 amino acids

Sequence
(BLAST)

001: MELISGLPED VARDCLIRVP YDQFPAVASV CKGWSAEIHS PDFHRRRRTT KQAQKILVTV QSKIDSDKTR TGLLAKSTTN PVYRLSVFEP KTGSWCELPL
101: GPELAFGLPM FCQIAGVGFD LVVMGGWDPD SWKASNSVFI YNFLSAKWRR GADMPGGPRT FFACASDQNR TVYVAGGHDE EKNALRSALA YDVAMDVWVP
201: LPDMSRERDE CKAVFRRGGA LCVVGGYCTE MQGRFERSAE VFDVAKWKWG PVEEEFLDAA ACPRTCVDGA DGAEGRMFMC RGGDVVALHG DTWRNVAKVP
301: GEIRNVACVG VWERVDAGNW IEWVWGKPHM GFVLDLKKSG LGLNLPAQRT TLVTVQSGLP SPNLVLLDLF FFYQVKMLNI IGA

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.