Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- extracellular 3
- golgi 2
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G59940.1 | KRG91925 | AT2G37040.1 | 21798944 |
| AT3G59940.1 | KRH34854 | AT2G37040.1 | 21798944 |
| AT3G59940.1 | KRG91925 | AT3G53260.1 | 21798944 |
| AT3G59940.1 | KRH34854 | AT3G53260.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH44388 | Soybean | cytosol | 34.29 | 37.39 |
| KRH47516 | Soybean | cytosol | 33.77 | 36.72 |
| KRH23494 | Soybean | cytosol | 32.73 | 35.2 |
| Zm00001d049016_P001 | Maize | cytosol | 33.51 | 34.68 |
| EES08254 | Sorghum | cytosol | 32.99 | 33.25 |
| Zm00001d007274_P001 | Maize | cytosol | 31.95 | 32.98 |
| EES09544 | Sorghum | cytosol | 32.73 | 32.9 |
| TraesCS4D01G084900.1 | Wheat | cytosol | 31.43 | 32.7 |
| TraesCS4B01G087800.1 | Wheat | cytosol | 31.43 | 32.7 |
| HORVU4Hr1G014970.1 | Barley | cytosol | 31.17 | 32.52 |
| TraesCS4A01G228800.1 | Wheat | cytosol | 31.17 | 32.43 |
| TraesCS4B01G087600.1 | Wheat | cytosol | 30.65 | 32.07 |
| KRH09825 | Soybean | cytosol | 31.69 | 31.85 |
| Os11t0246200-00 | Rice | cytosol | 31.43 | 31.59 |
| TraesCS4A01G228600.1 | Wheat | cytosol | 30.13 | 31.52 |
| CDX95589 | Canola | cytosol | 31.17 | 30.77 |
| AT2G44130.1 | Thale cress | cytosol | 32.21 | 30.32 |
| GSMUA_Achr6P28790_001 | Banana | cytosol | 12.99 | 30.3 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 30.13 | 30.29 |
| GSMUA_Achr6P06940_001 | Banana | cytosol | 29.09 | 30.27 |
| CDX83439 | Canola | cytosol | 30.39 | 30.0 |
| Zm00001d050815_P001 | Maize | nucleus | 28.83 | 29.76 |
| CDY41196 | Canola | nucleus | 30.65 | 29.5 |
| CDX79780 | Canola | cytosol | 31.95 | 29.43 |
| TraesCS4D01G085000.1 | Wheat | plastid | 30.91 | 29.24 |
| CDX71859 | Canola | cytosol | 30.39 | 29.1 |
| Bra007494.1-P | Field mustard | nucleus | 30.91 | 28.33 |
| Bra004807.1-P | Field mustard | cytosol | 31.43 | 28.21 |
| Bra000342.1-P | Field mustard | cytosol | 29.35 | 28.18 |
| Os02t0563000-00 | Rice | cytosol | 28.57 | 28.13 |
| AT3G59940.1 | Thale cress | cytosol | 30.39 | 27.99 |
| OQU85159 | Sorghum | cytosol | 26.23 | 26.3 |
Protein Annotations
| EntrezGene:100782813 | Gene3D:2.120.10.80 | MapMan:9.2.1.1.2 | EMBL:ACUP02003293 | InterPro:F-box-like_dom_sf | EnsemblPlantsGene:GLYMA_05G155600 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031463 | UniProt:I1K3W1 | InterPro:IPR015915 |
| EnsemblPlants:KRH58914 | ProteinID:KRH58914 | ProteinID:KRH58914.1 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF01344 |
| PANTHER:PTHR24412 | PANTHER:PTHR24412:SF383 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI00023399C8 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:34850340..34852013
Molecular Weight (calculated)
42941.9 Da
IEP (calculated)
5.814
GRAVY (calculated)
-0.282
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRCHYPCAP TSWIMMTYLT ASFYLYKCLK RHTLSLLTVM DNNTISDLIQ FNDLIPKLPS ELGLECLTRL PHSAHRVALR VCSQWHCLLQ SDAFYSHRKK
101: TGHTRKVTCL VQAREDQPLQ EKNNASVASV YGISVFDPES MTWDRVDPVP DYPSGLPLFC QLASCDGKLV LMGGWDPASY EPLTAVFVYD FRTSEWRRGK
201: DMPEKRSFFA IGAGVGRVYV AGGHDENKNA LSTAWAYDPR SDEWAGLDPM GRERDECEGV VIGDEFWVVS GYSTERQGMF DGSAEVLDIG SGGWREENGF
301: WEEGQCPRSC VGVGKDGRLV NWRGWDPGLR VGVCGVAVGS RVVLSGSDYE GAPHGFYLVD NRKLTKINVP EGFSGFVQSG CCVEI
101: TGHTRKVTCL VQAREDQPLQ EKNNASVASV YGISVFDPES MTWDRVDPVP DYPSGLPLFC QLASCDGKLV LMGGWDPASY EPLTAVFVYD FRTSEWRRGK
201: DMPEKRSFFA IGAGVGRVYV AGGHDENKNA LSTAWAYDPR SDEWAGLDPM GRERDECEGV VIGDEFWVVS GYSTERQGMF DGSAEVLDIG SGGWREENGF
301: WEEGQCPRSC VGVGKDGRLV NWRGWDPGLR VGVCGVAVGS RVVLSGSDYE GAPHGFYLVD NRKLTKINVP EGFSGFVQSG CCVEI
001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI
Arabidopsis Description
F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.