Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G087800.1 | Wheat | cytosol | 99.46 | 99.46 |
| TraesCS4A01G228800.1 | Wheat | cytosol | 98.92 | 98.92 |
| HORVU4Hr1G014970.1 | Barley | cytosol | 98.11 | 98.37 |
| TraesCS4D01G085000.1 | Wheat | plastid | 88.65 | 80.59 |
| Os11t0246200-00 | Rice | cytosol | 82.43 | 79.63 |
| Zm00001d049016_P001 | Maize | cytosol | 79.46 | 79.03 |
| EES09544 | Sorghum | cytosol | 80.81 | 78.07 |
| EES08254 | Sorghum | cytosol | 80.0 | 77.49 |
| Zm00001d007274_P001 | Maize | cytosol | 77.3 | 76.68 |
| GSMUA_Achr6P06940_001 | Banana | cytosol | 38.65 | 38.65 |
| GSMUA_Achr6P28790_001 | Banana | cytosol | 15.95 | 35.76 |
| TraesCS6D01G165600.1 | Wheat | cytosol | 30.81 | 32.11 |
| PGSC0003DMT400060940 | Potato | cytosol | 29.73 | 32.07 |
| CDX83439 | Canola | cytosol | 33.78 | 32.05 |
| CDY41196 | Canola | nucleus | 34.59 | 32.0 |
| CDX95589 | Canola | cytosol | 33.24 | 31.54 |
| KRH58914 | Soybean | extracellular, plasma membrane | 32.7 | 31.43 |
| Bra000342.1-P | Field mustard | cytosol | 34.05 | 31.42 |
| Solyc10g080610.1.1 | Tomato | cytosol | 29.19 | 31.4 |
| CDX71859 | Canola | cytosol | 34.05 | 31.34 |
| TraesCS7D01G352400.1 | Wheat | cytosol | 32.16 | 30.91 |
| Bra007494.1-P | Field mustard | nucleus | 34.86 | 30.71 |
| AT3G59940.1 | Thale cress | cytosol | 34.32 | 30.38 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 31.08 | 30.03 |
| VIT_05s0094g01590.t01 | Wine grape | cytosol | 29.46 | 29.86 |
| CDX79780 | Canola | cytosol | 33.51 | 29.67 |
| Bra004807.1-P | Field mustard | cytosol | 34.05 | 29.37 |
| AT2G44130.1 | Thale cress | cytosol | 32.43 | 29.34 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G084900.1 | EnsemblPlantsGene:TraesCS4D01G084900 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF34 | PFAM:PF00646 | PFAM:PF01344 | SEG:seg | SMART:SM00612 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | MapMan:9.2.1.1.2 | : | : | : |
Description
No Description!
Coordinates
chr4D:+:58946136..58947666
Molecular Weight (calculated)
39716.8 Da
IEP (calculated)
6.779
GRAVY (calculated)
-0.253
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNQKSRVQE CKVEHIDLIP GMPDDVAVDC LARVPHASFR SMRGVCRGWN TAAAAPDFAL ARAEAGANED LVYLLQFGNP AAADADGVAP ENAQAYGVSV
101: YNVTTGEWRR EGAAPPVPMF AQCAAVGSRL AVLGGWDPKT FEPVADVHVL DASTGVWRRG APMRSARSFF ACAEAGGKIY VAGGHDKLKN ALKTAEAYDA
201: GADAWDPLPD MSEERDECDG MATVAGDRFL AVSGYRTGRQ GGFERDAEWF DPASREWRRL ERVRAPPSAA HVVVRGRVWC IEGTAVMEYR GERRSWREVG
301: PSPPGLKAGT ARAVAVGGGE RVVVTGAIES EGGGTGHALW VFDVKSKNWT VVRPPPQFAG FVFSIGSVRV
101: YNVTTGEWRR EGAAPPVPMF AQCAAVGSRL AVLGGWDPKT FEPVADVHVL DASTGVWRRG APMRSARSFF ACAEAGGKIY VAGGHDKLKN ALKTAEAYDA
201: GADAWDPLPD MSEERDECDG MATVAGDRFL AVSGYRTGRQ GGFERDAEWF DPASREWRRL ERVRAPPSAA HVVVRGRVWC IEGTAVMEYR GERRSWREVG
301: PSPPGLKAGT ARAVAVGGGE RVVVTGAIES EGGGTGHALW VFDVKSKNWT VVRPPPQFAG FVFSIGSVRV
001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
Arabidopsis Description
F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.